Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7191 401 6e-107 seq3663 150 2e-31 >seq7191 Length=127218 Score = 401 bits (444), Expect = 6e-107 Identities = 470/635 (74%), Gaps = 0/635 (0%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| |||| || ||||| || |||||| | || |||| ||| Sbjct 41192 ATTTTGAGCTTAGGGAAAGGTCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATG 41251 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || |||||||| ||||| ||||| ||||| ||||| || | || || || || || Sbjct 41252 TGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCT 41311 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 || || || |||||||| ||||||||||| || || ||||||||||| || || || Sbjct 41312 GTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCC 41371 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAG 6733 | ||||||||||| || || || || |||||||||||||| || | ||| | || ||| Sbjct 41372 AGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAG 41431 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || |||||||| | ||||| || || |||||||||| ||| ||||| || |||||||| Sbjct 41432 AACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGGTTCCAG 41491 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || ||||| | ||| ||||||||||||||||| || | |||||| ||||| | ||| Sbjct 41492 GCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGC 41551 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 |||||||| |||| || || || || || | | | | || || || ||||| Sbjct 41552 AGCTGGTCTACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAA 41611 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCC 6973 || ||||||||||| || ||||| ||||||| ||| || || | || | | || ||| Sbjct 41612 TGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCC 41671 Query 6974 CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAG 7033 | |||||| |||||||| || || | || |||||||| ||||| ||| ||| || Sbjct 41672 AGGCTGTCCAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGAC 41731 Query 7034 AGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTC 7093 || ||||| | || |||| ||| | | ||||||||||||||||| | || |||||| Sbjct 41732 AGTTCCTTAGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTC 41791 Query 7094 CAGTACACACGTTTCGTCGTCAGCAGCGGAAATTC 7128 ||| | |||||||| || | ||||| |||||||| Sbjct 41792 CAGAATACACGTTTGGTTATAAGCAGAGGAAATTC 41826 Score = 401 bits (444), Expect = 6e-107 Identities = 470/635 (74%), Gaps = 0/635 (0%) Strand=Plus/Minus Query 34217 GAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTG 34276 |||||||| ||||| | || |||||||| | ||||||||| || | |||||||||||| Sbjct 41826 GAATTTCCTCTGCTTATAACCAAACGTGTATTCTGGAAGGGAGTTTTGGAGGAGCTGCTG 41767 Query 34277 TGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGG 34336 ||||| | | ||| |||| || | ||||| || || ||| ||| ||||| |||||| Sbjct 41766 TGGTTTATCAAGGGATCCACAAATGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATCTGG 41707 Query 34337 GACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGC 34396 || || | || || |||||||| |||||| | ||| || | | || | || || Sbjct 41706 GATGCCAATGGATCCTGAGACTTTTTGGACAGCCTGGGATTTTCCGCCCGACAAGAAGGA 41647 Query 34397 GACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGC 34456 ||| ||||||| ||||| || ||||||||||| || ||||| || || || | | Sbjct 41646 GACCTGGGCCCAGTCTATGGCTTCCAGTGGAGGCATTTTGGAGCAGACTACAAAGATATG 41587 Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAG 34516 | | || || || || || |||| ||||||||||| | ||||| |||||| | || Sbjct 41586 AATTCAGATTACTCAGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAA 41527 Query 34517 CGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTG 34576 ||||||||||||||||| ||| | ||||| || |||||||| || ||||| ||| || Sbjct 41526 ACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCTTTG 41467 Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| || || ||||| | |||||||| ||||| || | ||| | || |||||| Sbjct 41466 ATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGGTGAACAGAGAACTGTCC 41407 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 |||||||| || || || || ||||||||||| | || || || ||||||||||| || Sbjct 41406 TGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTCAACATTGCCAGC 41347 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 || ||||||||||| |||||||| || || || || || || || || | || Sbjct 41346 TATGCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGCAGCCAGGTGACTTTGTA 41287 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTG 34816 ||||| ||||| ||||| ||||| |||||||| ||||| |||| || | |||||| Sbjct 41286 CATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCACTGAAAACCCAGCTT 41227 Query 34817 CAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 || ||||| || |||| ||||| |||||||||| Sbjct 41226 CAGCGAGAACCAAGACCTTTCCCTAAGCTCAAAAT 41192 >seq3663 Length=525456 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||| |||||||||| || || ||||| | |||||||| ||||| || | ||| Sbjct 215540 GATCTTCCTTTGATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGGTGAAC 215599 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||| |||||||||||||| || || || || ||||||||||| | || || || ||| Sbjct 215600 GGGGAACTGTCCTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTC 215659 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || ||||||||||| |||||||| || || Sbjct 215660 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACA 215700 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||||||||| || || ||||||||||| || || || | ||| Sbjct 215700 TGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCC 215641 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || || || || |||||||||||||| ||||| ||| | || ||||| ||| Sbjct 215640 ATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCCCCGTTCACCACATAGAACTGG 215581 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||| | ||||| || || |||||||||| ||| ||||| Sbjct 215580 CAGAGAGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATC 215540 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | ||||| || || ||| ||| ||||| |||||||| || | || || | Sbjct 211807 CCACAAATGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 211866 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||||||||||| | ||| || | | || | || || ||| ||||||| |||| Sbjct 211867 GAGACTTTCTGGACAGCCTGGGATTTTCCGCCCGACAAGAAGGAGACCTGGGCCCAGTCT 211926 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || ||||| || || || Sbjct 211927 ATGGCTTCCAGTGGAGGCATTTTGGAGCAGACTA 211960 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || ||||| ||||||| ||| || || | Sbjct 211960 TAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGT 211901 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | || ||| | |||||||||||||||| || || | || |||||||| ||| Sbjct 211900 CGGGCGGAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 211841 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || ||||| | || |||| Sbjct 211840 ACTCCCTTGGAAGACAGTTCCTTAGCATTTGTGG 211807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448143851405040