Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1040 183 3e-41 seq7191 167 2e-36 seq2083 114 1e-20 seq3663 96.9 3e-15 >seq1040 Length=283773 Score = 183 bits (202), Expect = 3e-41 Identities = 200/266 (75%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 1260 TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCA 1319 |||| | || |||| | || |||| | ||||| |||||||| ||| ||||| | Sbjct 104457 TGTTCTCTACAAACTTCCCAGGAAGCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTA 104398 Query 1320 AGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATAC 1379 ||||||||||||||| |||| || || |||| |||||||| || ||||| || || Sbjct 104397 AGCCCAGAAAACATGATTACTTACAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTAT 104338 Query 1380 AAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAAC 1439 || || | | ||||| |||||||| ||||| | ||| || | || ||||||||||| Sbjct 104337 AAGGACAGGGTCAACATCACTGAGCTGGGACTCCGGAACTCAGCCATTACCTTCTGGAAT 104278 Query 1440 ACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAG 1499 ||||||||||| ||||| ||||| |||| |||| | || || | ||||| ||||||||| Sbjct 104277 ACAACATTGGAGGATGAGGGGTGTTACATGTGTCTCTTCAATATGTTTGGTTCTGGGAAG 104218 Query 1500 ATGTCAGGAATAGGGTGTCTAACCCT 1525 || ||||||| || || || ||||| Sbjct 104217 ATCTCAGGAACAGCCTGCCTCACCCT 104192 >seq7191 Length=127218 Score = 167 bits (184), Expect = 2e-36 Identities = 407/609 (67%), Gaps = 26/609 (4%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || ||| ||||||||||||||||||||||| || | ||| ||||| || | |||||| Sbjct 41228 AGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGT 41287 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || || ||||| | ||| ||||||||||| || | || | ||| Sbjct 41288 ACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAG 41347 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || |||||||||||||||||| |||| | |||||| | ||||| Sbjct 41348 CTGGCAATGTTGAAGGGTACACCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAG 41407 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || || | ||| | ||||| ||||| | | || || |||||||| |||| Sbjct 41408 GACAGTTCTCTGTTCACCACATAGAACTGGCAGAGAGCATGGCAGGGAGGCAGCGCCATC 41467 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTGCTAT-ATGGT 118749 || || | || |||||||| | ||||| |||||| || | ||| Sbjct 41468 AAAGGAAGATCTTTTGGGTTCCAGGC-----ACACATGATGATTCTTCTGTCATCAGGGT 41522 Query 118750 TCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCC--AGTATACT 118807 | || || ||||| | || || | ||| || || || | || |||| || Sbjct 41523 TGGTTTTG-ATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGACCTGAGTAATCT 41581 Query 118808 GAGACTCGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCC 118867 || | || || |||| || ||||| |||||| ||||| || || ||||| || || | Sbjct 41582 GA-ATTCATAT-CTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGC 41639 Query 118868 CCAGATCTCC-----CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGA 118922 |||| ||||| | || | |||||| || | || | ||| ||| || Sbjct 41640 CCAGGTCTCCTTCTTGTCGGGCGGAAAATC----CCAGGCTGTC-CAAAAAGTCTCAGGA 41694 Query 118923 CCCATTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACC 118982 ||||| |||| ||| || ||||| || | ||| || |||| ||||| || || Sbjct 41695 TCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGCATTTGTGGATCC 41754 Query 118983 ACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAA 119042 | | |||||| || |||||||| | ||| || |||| || || ||| ||| ||| Sbjct 41755 CTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATACACGTTTGGTTATAAG 41814 Query 119043 CAGTGGAAA 119051 ||| ||||| Sbjct 41815 CAGAGGAAA 41823 >seq2083 Length=649366 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 246547 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 246606 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | | || || |||||| Sbjct 246607 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCTCTGGTGGACAAC 246666 Query 3365 ATTGCCGCGTGGATGA 3380 || ||| |||||||| Sbjct 246667 ATCGCCTTGTGGATGA 246682 >seq3663 Length=525456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || | |||||||| | || || || Sbjct 215712 AGGCCCGTGATGTGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGT 215653 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||||||||||||| |||| | |||||| | ||||| || || |||||||| | Sbjct 215652 ACACCCAGACCCATGTCTCCTGACCGCTGGTATAGCTGGCAGGACAGTTCCCCGTTCACC 215593 Query 118654 ACATAAAACTG 118664 ||||| ||||| Sbjct 215592 ACATAGAACTG 215582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414369926768548