Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1925 82.4 5e-11 >seq1925 Length=520723 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||| || |||||||||||||| ||||||||||| || || |||| || ||| | Sbjct 381285 AAAATACAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACGCTTGAGGTTGAACCC 381344 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || | | || || ||||| || || || || ||||| |||| | | Sbjct 381345 TCAGATGCTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCT-GTT 381403 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | | || ||||| || || ||| |||| || | ||||| ||||| || ||| Sbjct 381404 CAGCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGCACTTTGTCAGACTAC 381463 Query 27967 AACATCCAAAAAGAG 27981 ||||| ||||| ||| Sbjct 381464 AACATTCAAAAGGAG 381478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355770640546539