Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1696 109 4e-19 seq304 98.7 7e-16 seq1660 95.1 8e-15 seq3495 93.3 3e-14 seq1925 87.8 1e-12 >seq1696 Length=1012329 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| || ||||| || || || || | ||| || || ||||| || Sbjct 927070 AAAATGCAGATTTTCGTAAACACCCTTACTGGGAAGACCACCACGCTTGAGGTTGAGCCC 927011 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | || || || || || ||||| | || || ||| Sbjct 927010 TCGGATACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGAT 926951 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| || || ||||||||||| | ||| |||||| || ||| Sbjct 926950 CAGCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTATCAGACTAC 926891 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 926890 AACATTCAAAAGGAGTCCAC 926871 >seq304 Length=872862 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || ||||| || || Sbjct 181290 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCC 181349 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | || |||||||| | || || || Sbjct 181350 AGTGACACCATCGAGAATGTGAAAGCCAAGA-TCCAGGATAAAGAAGGCATTCCCCCTGA 181408 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || |||||||| | ||||| | || || Sbjct 181409 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTA 181468 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 181469 CAACATCCAGAAAGAGTCCAC 181489 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 181749 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 181808 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | || |||||||| | || || || || Sbjct 181809 GACACCATCGAGAATGTGAAAGCCAAGA-TCCAGGATAAAGAAGGCATTCCCCCTGACCA 181867 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | ||||| | || ||||| Sbjct 181868 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 181927 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 181928 CATCCAGAAAGAGTCCAC 181945 >seq1660 Length=831338 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAA-CCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||||||||||||||| |||| |||| || || || || ||||| ||||| ||||| Sbjct 181471 AAAATGCAGATTTTCTAAAAAAACCCTTACTGGGAAGACCATCACGCTCGAGGTTGAACT 181530 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||| ||| | |||| | || || || || || ||||| | || || || Sbjct 181531 CTCGGATACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCGGA 181590 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | | || ||||| || || ||||||||||| | ||| ||||| || || Sbjct 181591 TCAGCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCAGACTA 181650 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||| ||||| |||||||| | ||| | || || || Sbjct 181651 CACCATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAG 181689 >seq3495 Length=1667739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || ||| Sbjct 879240 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 879181 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | || |||||||| | || || || || Sbjct 879180 GACACCATCGAGAATGTGAAAGCCAAGA-TCCAGGATAAAGAAGGCATTCCCCCTGACCA 879122 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || |||||||| | ||||| | || ||||| Sbjct 879121 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAA 879062 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 879061 CATCCAGAAAGAGTCCAC 879044 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || ||||| || || Sbjct 879698 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCC 879639 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || || || |||||||| | || || || Sbjct 879638 AGTGACACCATCGAGAATGTGAAAGC-CAAGATCCAGGATAAAGAAGGCATTCCCCCTGA 879580 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || |||||||| | ||||| | || || Sbjct 879579 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTA 879520 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || ||||| ||||| Sbjct 879519 CAATATCCAGAAAGAATCCAC 879499 >seq1925 Length=520723 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||| |||||||| || |||||||| || || || || ||||| || || ||||| || Sbjct 381285 AAAATACAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACGCTTGAGGTTGAACCC 381344 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| | || || || || || ||||| | || | | | Sbjct 381345 TCAGATGCTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCT-GTT 381403 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| || || ||||||||||| | ||||||||| || ||| Sbjct 381404 CAGCAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGCACTTTGTCAGACTAC 381463 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 381464 AACATTCAAAAGGAGTCCAC 381483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337922443907756