Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7191 322 4e-83 seq1357 91.5 1e-13 seq3663 87.8 1e-12 >seq7191 Length=127218 Score = 322 bits (356), Expect = 4e-83 Identities = 440/621 (71%), Gaps = 1/621 (0%) Strand=Plus/Plus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 |||||||| ||| || || | || ||||| | |||| || || | ||| | ||||| Sbjct 41204 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTA 41262 Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730 | || |||||||||| || || ||||| || || || | || || |||| ||| || Sbjct 41263 AATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGC 41322 Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790 |||||||| ||||| |||| |||||||| ||||| ||||| || || || |||||||| Sbjct 41323 AATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTC 41382 Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850 ||||||| |||||| |||||||| || || |||| || ||| || ||||| || | Sbjct 41383 TCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAGAACTGGCAGAG 41442 Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910 |||||||| ||||| || ||||| | | | ||||| |||||||||||||||| ||| Sbjct 41443 AGCATGGCAGGGAGGCAGCGCCATCAAAGGAAGATCTTTTGGGTTCCAGGCACACATGAT 41502 Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970 ||| | ||||| || |||||| | ||||| ||| | | ||||||||||| || || Sbjct 41503 GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTAC 41562 Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030 || || ||||| |||| | |||||||||||||| Sbjct 41563 TCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTG 41622 Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090 ||| || || || || ||||||||||| |||| | | || ||| ||||||| Sbjct 41623 GAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTCCAA 41682 Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30150 |||||||| ||| || ||||| |||||||| || || ||||| || || || || | Sbjct 41683 AAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGC 41742 Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210 |||||||| || ||| ||||||||||||||||||| || ||||||| || || | Sbjct 41743 ATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATACACG 41802 Query 30211 CTTGGTCGTGAGGAGGGGAAA 30231 ||||| | || || ||||| Sbjct 41803 TTTGGTTATAAGCAGAGGAAA 41823 >seq1357 Length=219996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | |||||| | | ||||| |||||| || || Sbjct 173731 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 173790 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||||||||| || |||||||| ||||||| ||||| |||||| Sbjct 173791 ATGGAGAACCAAGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 173838 >seq3663 Length=525456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || ||||||||||| |||| | | || Sbjct 211948 AAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAAT 211889 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||||| |||||||| ||| || ||||| |||||||| || || ||||| Sbjct 211888 CCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 211829 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || || || | |||||||| || Sbjct 211828 GACAGTTCCTTAGCATTTGTGGATCC 211803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406058470438102