Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7191 356 2e-93 seq3663 102 6e-17 >seq7191 Length=127218 Score = 356 bits (394), Expect = 2e-93 Identities = 456/624 (73%), Gaps = 7/624 (1%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 |||||||| ||| || || | || ||||| || ||||| || || | ||||| |||||| Sbjct 41204 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGGGTTTTCAGTGGCTCAATGTGATTCAGGTA 41262 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 | || || ||||||| || || ||||| || || || | || || |||| ||| || Sbjct 41263 AATATGTGCATCTCCCAAAGTATGTACAAAGTCACCTGGCTGCAGGCCTGTGATGTGTGC 41322 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 |||||||| ||||| |||| |||||||| ||||| |||||||| || || |||||||| Sbjct 41323 AATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGTACACCCAGACCCATGTC 41382 Query 27285 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATAT 27344 || |||| |||||| ||||| || || || |||| | || || ||||| || | Sbjct 41383 TCCTGACCGCTGGTATAGCTGGCAGGACAGTTCTCTGTTCACCACATAGAACTGGCAGAG 41442 Query 27345 GGCGTGGCACGGAGGAAGAGCCATGA--GGCCCAAG-TCTTTGGGGTTCCAGGCGCACAC 27401 || ||||| ||||| || ||||| | || ||| ||||| ||||||||||| |||| Sbjct 41443 AGCATGGCAGGGAGGCAGCGCCATCAAAGG---AAGATCTTTTGGGTTCCAGGCACACAT 41499 Query 27402 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 27461 |||||| | ||||| || |||||| | ||||| ||| | | ||||||||||| || Sbjct 41500 GATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTC 41559 Query 27462 CACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 27521 || || || ||||| ||| |||| || |||| |||||||| ||||||||||| Sbjct 41560 TACTCCTTGACCTGAGTAATCTGAATTCATATCTTTGTAGTCTGCTCCAAAATGCCTCCA 41619 Query 27522 TTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 27581 ||||| || || || || ||||||||||| |||| | | || ||| |||| Sbjct 41620 CTGGAAGCCATAGACTGGGCCCAGGTCTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTC 41679 Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 ||||||||||| ||| || ||||| |||||||| || || ||||| || || || || Sbjct 41680 CAAAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCCTT 41739 Query 27642 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 27701 | |||||||| || ||| ||||||||||||||||||| || ||||||| || || Sbjct 41740 AGCATTTGTGGATCCCTTGATAAACCACAGCAGCTCCTCCAAAACTCCCTTCCAGAATAC 41799 Query 27702 CCTCTTGGTCGTGAGGAGGGGAAA 27725 | ||||| | || || ||||| Sbjct 41800 ACGTTTGGTTATAAGCAGAGGAAA 41823 >seq3663 Length=525456 Score = 102 bits (112), Expect = 6e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || |||| |||||||| ||||||||||| ||||| || || || || ||||||| Sbjct 211971 TCATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAGACTGGGCCCAGGT 211912 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| |||| | | || ||| |||||| |||||||| ||| || ||||| | Sbjct 211911 CTCCTTCTTGTCGGGCGGAAAATCCCAGGCTGTCCAGAAAGTCTCGGGATCCATTGGCAT 211852 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||| || || ||||| || || || || | |||||||| || Sbjct 211851 CCCAGATTTTCACTCCCTTGGAAGACAGTTCCTTAGCATTTGTGGATCC 211803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369411922222067