Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq3663 87.8 7e-13 seq7191 82.4 3e-11 >seq3663 Length=525456 Score = 87.8 bits (96), Expect = 7e-13 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 |||||| || ||||||||||| | || | ||| |||||||| | |||| || | || || Sbjct 215552 ATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGT-GGTGAACGGGGAACTGTC 215610 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || |||||||| | |||||| |||| || || || ||||||||||| Sbjct 215611 CTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTCAACATTGCCAG 215670 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||| | |||| || | ||||||| Sbjct 215671 CTATGCTCTGCTCACCTACATGATTGC 215697 >seq7191 Length=127218 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTA-AGCTTTC 52168 |||||| || ||||||||||| | || | ||| |||||||| | |||| | | || || Sbjct 41466 ATGGCGCTGCCTCCCTGCCATGCTCTCTGCCAGTTCTATGTGG-TGAACAGAGAACTGTC 41408 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || |||||||| | |||||| |||| || || || ||||||||||| Sbjct 41407 CTGCCAGCTATACCAGCGGTCAGGAGACATGGGTCTGGGTGTACCCTTCAACATTGCCAG 41348 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||| | |||| || | ||||||| Sbjct 41347 CTATGCTCTGCTCACCTACATGATTGC 41321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190048240399770