Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castor_20canadensis_20[refseq_20GCF_5F001984765.1_202017-02-04] 21,157 sequences; 2,518,306,565 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq7420 163 4e-35 seq1003 159 5e-34 >seq7420 Length=210200 Score = 163 bits (180), Expect = 4e-35 Identities = 343/500 (69%), Gaps = 16/500 (3%) Strand=Plus/Minus Query 8975 ATTCTACTAGCTGGGTAATGCCGTGAGTCATGAGTATGGAATTGTTGTAGACGAA--GTT 9032 |||| || | |||| ||| ||||| || || ||||| |||| ||||| || ||| Sbjct 210199 ATTCCACAAACTGGTTAAGTCCGTGTTCTATCAGGATGGAGTTGTGGTAGAGAAACTGTT 210140 Query 9033 AACGTAGTCATACTTTGTTTTATCAATCTCAAATGCATCCGGCATGAGAGAATGCCAGTG 9092 | ||| |||| | ||| |||| || | || |||| |||| ||||||||| Sbjct 210139 TAA--AGTTGTACTCCTGCTCATCTATCTAGAAGGTGTCGGGCAGCAGAGGATGCCAGTG 210082 Query 9093 ATACAACATGTTAAACTCGGAAAATATACGATTTTGGTACTGGAACGAAGTACCAAAGAG 9152 || | |||||||||| ||| | | |||||||||||||| | || || Sbjct 210081 GTAGAGTGTGTTAAACTCTGAAGGAACCCAGTTTTGGTACTGGAATTGTTGAATGAACAG 210022 Query 9153 CAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCCGCTGAGCTGCTGAACGTA---TTG 9209 || ||||| | |||| ||| | || || ||||||| | ||||| || || ||| Sbjct 210021 CAACTCGGGATCAAACCCCAGATTGAAGTGAGAGCCGCTCAAGTGCTGCACATAGTCTTG 209962 Query 9210 CGTCACGATAATGTTGATGGTTTCCCCGAT-AATGATGAGTCGAGTGGTCTGGAACAGTT 9268 ||| ||| ||||| || | | || |||| |||| | || |||||||| | Sbjct 209961 GAGCAC---AATCTTGATCGTCTGTGCTATTAATG-TGAGCCTGGTAGTCTGGAATAACC 209906 Query 9269 GCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCC 9328 |||| ||| ||||| || || || ||||| || ||||| || || ||| |||| | || Sbjct 209905 GCTCATCATCCCATTGGGG-TGCTCCTGTTTGAGCACATCCCATACTCTGCTGTGCTGCC 209847 Query 9329 TGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGA 9388 ||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||| || | Sbjct 209846 GCAGCCAAATTGTGGCATACATCATGAGACCAGGCACCAGACCAAAGACCTCTTGCCCCA 209787 Query 9389 CAGCCAGACGCATGT-TTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTC- 9446 |||| | |||| || ||| ||| | || ||| |||||||| | ||||| ||| Sbjct 209786 CAGCAAACCGCAGGTGTTTGGGGAAGCAAGGCAGG-TAGATCATTTCTACCTGAGTGTCT 209728 Query 9447 TTTGACCGAGGGGGGATACA 9466 |||||| | |||||| |||| Sbjct 209727 TTTGACTGTGGGGGGGTACA 209708 >seq1003 Length=1033224 Score = 159 bits (176), Expect = 5e-34 Identities = 217/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||||| | || ||||| || || ||||| | |||| ||||||||||| | Sbjct 479070 GAACACTGAACGAAGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTG 479011 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 479010 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCCCCAAAAGTGCTCGGCTTCCAGTATT 478951 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 || ||||||||| ||| |||| |||||||| | ||||||||| || |||| || | Sbjct 478950 GAGGAGAGCAGATGGGGTTACCCATAAGGCCTTTCAAGGAGAACGGTGCTCCCATTTCTA 478891 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || || || || | ||||| |||||||| |||| | | | || | Sbjct 478890 CCATGGTCTCCCCAAATATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATAGA 478831 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| ||| || | ||| || |||||||| || || ||||| || ||||| |||| Sbjct 478830 GCTCCATAGCATCAATGTCACCATAAAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCTC 478771 Query 8583 CTG 8585 ||| Sbjct 478770 CTG 478768 Score = 150 bits (166), Expect = 3e-31 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || |||||||| | |||| ||| ||| || || || || ||||| || Sbjct 477330 ATGAGCCTGGTAGTCTGGAATAACCGCTCATCATCCCACTCAGGGTGCTCCTGTTTAAGC 477271 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || ||||||||||||| | |||||| ||||| ||||||||||| ||||| Sbjct 477270 ACATCACATACTCTGTTGTGTTCCCGCAACCAGATTGTGGCATACATCATGAGACCAGGC 477211 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| |||| || || || || | |||| | || || | | || || Sbjct 477210 ACCAGACCAAAGACCTCATGCCCCACGGCAAATCGCAGATGCTCAGGGATATGAGGCGGG 477151 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | ||||| ||| ||||| | ||||||||||| || || ||||| ||| Sbjct 477150 TAGATCATCTCTACCTGAGTGTCCTTGACTGTGGGGGGATACACCTCTCCATCAATTATC 477091 Query 9484 TGA 9486 ||| Sbjct 477090 TGA 477088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| || ||||| || ||| | ||| ||| | || Sbjct 476123 TCTTACCCCATGGCCCAGTCCTTTGGTAAAGGCAGGTCCTTGTTTTTGATCTGTCTTGAA 476064 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || || || |||||| |||| || |||||||| | || ||||| || || || Sbjct 476063 AAACTGATGGGTAAAGTGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGTGGGTC 476004 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | || | || ||| |||||||| ||| Sbjct 476003 AGGGATGAACTTTCTTCTTAGGAGAACTTTTTCCAGAAC 475965 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| ||||| | |||||||| || |||| | || ||||| || || | Sbjct 475532 TCACCTTTCACCCCCATGGGAGTTGGGCAGTCGTCGGCTACAGGAGGAAGGGCTCTGGTA 475473 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| || ||||| |||||||| || ||| | |||| || ||||| | Sbjct 475472 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAATTTTTGTAGCCATAGTGTGCATTGTAAGTT 475413 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || ||||||||||||| ||||| |||| Sbjct 475412 GGCGGACTGTCAATCAAATGTGATCTGGCTGA 475381 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || |||| | |||||||| || || | |||||||| ||||| Sbjct 477862 CTTACCCTGCCAGCATTTTGCCTGGTGAACGACTCCACAAACTGGGTAAGTCCGTGTTCT 477803 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 || || ||||| |||||||||| || ||| | ||| |||| | ||| |||| Sbjct 477802 ATCAGGATGGAGTTGTTGTAGAGAAACTGTTTAA--AGTTGTACTCCTGCTCATCTATCT 477745 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 || | || |||| |||| ||||||||| || | |||||||||| | | || | Sbjct 477744 GGAAGGTGTCAGGCAGCAGAGGATGCCAGTGGTAGAGTGTGTTAAACTCTGCAGCGATCC 477685 Query 9122 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 | |||||||||||||| || |||| || || | |||| ||| | || | Sbjct 477684 GGTTTTGGTACTGGAATTGTTGGTTGAACAGCAACTCAGGATCAAACTTCAGTTTGAAGT 477625 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206 | |||||||| | ||||| ||||| Sbjct 477624 GATAGCCGCTCAAGTGCTGTACGTA 477600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716687212969280