Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq29 100 3e-16 seq1 82.4 8e-11 >seq29 Length=3441549 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| ||||||||||| || |||||||||||||| || ||||| |||||||| ||||| Sbjct 3376377 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3376436 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || ||||| || || || || || | ||||||||||| Sbjct 3376437 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3376474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| ||||| || ||||| || | |||||||| ||| ||||||| Sbjct 3375146 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3375205 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || |||| || || || |||||||| || || || || |||| ||||| | Sbjct 3375206 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGG 3375265 Query 17106 C 17106 | Sbjct 3375266 C 3375266 >seq1 Length=88624873 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| || |||||||| ||||||||||| |||||||| | |||||| ||| ||||| Sbjct 4801570 ATATAGGTGTCGATGAGCAGGCTGTACATCTCGGAGTGGACGTTCTCGATGAGGATCTGG 4801511 Query 17294 AATCCGTAAAAGCATCGGGCTTC 17316 || ||||| ||||| ||||| || Sbjct 4801510 AAGCCGTAGAAGCAGCGGGCCTC 4801488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525344559080