Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq29 87.8 2e-12 >seq29 Length=3441549 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| ||||| || || | |||||||||||| || || ||||| || ||||| ||||| Sbjct 3376377 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3376436 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || || ||||| || |||||||| | ||||| ||||| Sbjct 3376437 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3376474 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| ||||| |||||||| || | || ||||| ||| |||||||| Sbjct 3375148 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3375207 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| |||| ||||| || || ||||| || || || || || | ||||| || Sbjct 3375208 AGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCT 3375267 Query 16346 ATTAATCGTTCC 16357 | | |||||| Sbjct 3375268 ACCACGCGTTCC 3375279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394384518920