Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq45 120 2e-22 seq112 84.2 2e-11 >seq45 Length=48336697 Score = 120 bits (132), Expect = 2e-22 Identities = 292/443 (66%), Gaps = 36/443 (8%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 || |||| || ||| |||||||||| || ||||| ||| | |||||||| || | Sbjct 11397393 TAGTAATCATCCTTTTCATATACTTGAAGGTTGTATTTACTGCTTTTCTCCTCCTAGGTC 11397334 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | |||||| |||| ||| ||||||| ||| ||| | |||| Sbjct 11397333 TCAGAAAGCACACCTGGGTATTCTAGTAAA------------------TCAGCTGCTGGG 11397292 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| |||||| ||||| || | | |||| |||||||| || || |||| || | Sbjct 11397291 GAAAATGTGTCATTATCAAATTCCTACGCGATCTGTGTCACAAATAGCTTGAGATGGCCT 11397232 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTC-------CAATTATCCAGACCAT 4199 | || | | ||||| |||| ||||||||||| | | |||||| ||| | Sbjct 11397231 NGCCAAGTTACAGCTTTGGTATAAACAGAACTACCACGCCCCCTCCCCTATCCAAACCGT 11397172 Query 4200 GTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCAT----CATCTAAAC 4255 ||| |||||| |||||||||||| || || |||||| ||| |||| || | | || Sbjct 11397171 GTCCACTTTAGCTGCTAATTCTGGTTGCTCAGTAAGTGGTAAGGCATCACCCACCCAGAC 11397112 Query 4256 TCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACAT 4315 | || | || ||| |||||| || || |||| | ||| | || |||| || Sbjct 11397111 T-TTGGGCAAGAAAAGAGCTCCTTGCAGAGATTCCTGGAATTCTCTACTTAGAA----AT 11397057 Query 4316 TAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT-GAGAACCAAGTCTTTTTACCC 4374 | |||| | ||| ||| | || |||||||||||| |||| || ||||| |||| Sbjct 11397056 ATACTCTGTCCTTTGAAGATAGATT-TTCTCAGGAATTGGAGAGTCAGGTCTTCCTACCT 11396998 Query 4375 ATAATCACTAAATTCTGTTTATC 4397 |||| ||||| ||||||| Sbjct 11396997 GTAATGGGAAAATTTCGTTTATC 11396975 >seq112 Length=81087358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4061 TGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCC 4120 ||||||||| | ||| | |||||| ||||| ||||||| |||||| || |||||||| | Sbjct 22744683 TGTATTTCTTCAAATCGATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCATGATTC 22744624 Query 4121 TAGTCACAAACAGTTT 4136 | |||||||||||||| Sbjct 22744623 TTGTCACAAACAGTTT 22744608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361237414992881