Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 123 3e-23 seq29 102 1e-16 seq334 100 3e-16 >seq5 Length=4632403 Score = 123 bits (136), Expect = 3e-23 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3954350 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3954291 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||| Sbjct 3954290 GGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3954231 Query 53269 ACTATTTCTAAGACCGTA 53286 ||| ||||| | ||| || Sbjct 3954230 ACTGTTTCTTACACCATA 3954213 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | || Sbjct 3939186 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTG 3939127 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3939126 CTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGG 3939067 Query 54148 TTCCAAGTATAT 54159 |||| ||| || Sbjct 3939066 CTCCAGGTAAAT 3939055 >seq29 Length=3441549 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | ||| ||||| || | ||||| |||||||| |||||||||||||| ||||| Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || ||||||||||| | |||||| || || || |||||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475 >seq334 Length=75508170 Score = 100 bits (110), Expect = 3e-16 Identities = 197/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 52925 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 52984 |||||||| |||| ||| || |||||||| ||||| || || || || || |||| || Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557 Query 52985 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 53044 | | || | || | ||||||| | | ||||||| |||| | ||| || ||| Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617 Query 53045 AGGTTT-GTAT--TCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | | | ||| |||| |||| ||| || | |||||| ||| || || || ||| Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677 Query 53102 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 53161 |||||||| | | ||| || | | | | | || ||||| || || ||| ||||| Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736 Query 53162 CCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTC 53205 || |||||||| ||| |||||||| || || |||||| | ||||| Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698363220880