Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq778 230 3e-55 seq56 192 7e-44 seq34 132 6e-26 >seq778 Length=60969063 Score = 230 bits (254), Expect = 3e-55 Identities = 546/811 (67%), Gaps = 18/811 (2%) Strand=Plus/Plus Query 9549 GAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATT 9608 |||| |||||| | | || ||||| | ||| | |||||||| || |||||| |||| || Sbjct 47076200 GAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTT 47076259 Query 9609 TCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGG 9668 || || || | || || |||| ||||| || | || | || | ||| ||||| Sbjct 47076260 CCTCTTCACGCTTCCCTTCTGGACTTACTATGTTC-ACTGGAACAAG--TGGGTGTTTGG 47076316 Query 9669 TATTTCCCTGTGTAAACTG--CTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 | | ||||||| | ||||||| | | ||| || ||| |||| || || Sbjct 47076317 CCACTTCATGTGTAAGATCATCTCAGGGCTCTAC--TACGTGGGCTTGTTCAGCGAGATC 47076374 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786 || | |||||||||||| || | ||||||||||| || ||||| |||| || || Sbjct 47076375 TTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCCATTGTCCATGCCGTGTTCGCC 47076434 Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846 || | | || ||||| | ||| || | ||| |||| ||||||| ||||||| Sbjct 47076435 CTGCGAACCCGTACTGTAACTTTTGGTATCATAACCAGTGTCATTACCTGGGTTCTGGCG 47076494 Query 9847 GGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGG 9903 | | | | || | ||||||||||| | ||| |||| || | || || || Sbjct 47076495 GTGCTAGCTG-CGCTCCCTGAATTCATGTTTTATGGGACTCAGGGGCACTTTGAAGTCTT 47076553 Query 9904 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 9963 ||| |||| ||||| |||||||||| | | | |||| ||| ||| | | Sbjct 47076554 ATTC--TGTGGTCCTTCTTACCCAGAGAAGAAAGAACACCACTGGAAGCGTTTCCAAGCT 47076611 Query 9964 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 10023 | | ||| || || |||| | ||||||||||||||| |||||||| Sbjct 47076612 CTCAGGATGAACATTTTTGGTCTGGCACTCCCTCTGCTCATTATGATCATCTGCTACACA 47076671 Query 10024 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 10083 | ||| || | | ||| |||| | ||||| || || ||||||||||||||| | ||| Sbjct 47076672 GGAATCATTAAGACCCTGCTGAGATGTCCCAGTAAAAAAAAGTACAAGGCCATCCGACTC 47076731 Query 10084 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 10143 || |||||||| ||||||| || |||||| || |||||||| |||||| | | ||||| Sbjct 47076732 ATTTTTGTCATTATGGTGGTCTTTTTTGTGTTCTGGACACCTTACAACCTGCTCCTCCTT 47076791 Query 10144 CTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGAC 10203 | ||| ||||| | | ||||| | | ||| || ||||| | ||||| Sbjct 47076792 TTCTCTGCCTTTGA-TCTGTCCTTCCTGGATAACTGTGAGC--GGAGCAAACAGCTGGAC 47076848 Query 10204 ATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATC 10263 ||||| || | ||| | | ||| |||| ||||| ||||||||||| | ||| Sbjct 47076849 ATGGCCAAGCACGTGACAGAGGTGATCGCCCACACCCACTGCTGCATCAACCCCATCATC 47076908 Query 10264 TACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGT 10322 ||||| ||||||||||||| ||| ||||| ||||| ||||||||| |||| | || Sbjct 47076909 TACGCCTTCGTGGGGGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTGCACAGGAATGT 47076967 Query 10323 GGCCATCTACCTCTGCAAGTACATCCCCTTC 10353 | |||| || | |||| ||||| |||||| Sbjct 47076968 GACCATGCACTTGAGCAAATACATTCCCTTC 47076998 Score = 230 bits (254), Expect = 3e-55 Identities = 546/811 (67%), Gaps = 18/811 (2%) Strand=Plus/Plus Query 176435 GAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATT 176494 |||| |||||| | | || ||||| | ||| | |||||||| || |||||| |||| || Sbjct 47076200 GAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTT 47076259 Query 176495 TCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGG 176554 || || || | || || |||| ||||| || | || | || | ||| ||||| Sbjct 47076260 CCTCTTCACGCTTCCCTTCTGGACTTACTATGTTC-ACTGGAACAAG--TGGGTGTTTGG 47076316 Query 176555 TATTTCCCTGTGTAAACTG--CTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 | | ||||||| | ||||||| | | ||| || ||| |||| || || Sbjct 47076317 CCACTTCATGTGTAAGATCATCTCAGGGCTCTAC--TACGTGGGCTTGTTCAGCGAGATC 47076374 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672 || | |||||||||||| || | ||||||||||| || ||||| |||| || || Sbjct 47076375 TTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCCATTGTCCATGCCGTGTTCGCC 47076434 Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732 || | | || ||||| | ||| || | ||| |||| ||||||| ||||||| Sbjct 47076435 CTGCGAACCCGTACTGTAACTTTTGGTATCATAACCAGTGTCATTACCTGGGTTCTGGCG 47076494 Query 176733 GGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGG 176789 | | | | || | ||||||||||| | ||| |||| || | || || || Sbjct 47076495 GTGCTAGCTG-CGCTCCCTGAATTCATGTTTTATGGGACTCAGGGGCACTTTGAAGTCTT 47076553 Query 176790 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 176849 ||| |||| ||||| |||||||||| | | | |||| ||| ||| | | Sbjct 47076554 ATTC--TGTGGTCCTTCTTACCCAGAGAAGAAAGAACACCACTGGAAGCGTTTCCAAGCT 47076611 Query 176850 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 176909 | | ||| || || |||| | ||||||||||||||| |||||||| Sbjct 47076612 CTCAGGATGAACATTTTTGGTCTGGCACTCCCTCTGCTCATTATGATCATCTGCTACACA 47076671 Query 176910 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 176969 | ||| || | | ||| |||| | ||||| || || ||||||||||||||| | ||| Sbjct 47076672 GGAATCATTAAGACCCTGCTGAGATGTCCCAGTAAAAAAAAGTACAAGGCCATCCGACTC 47076731 Query 176970 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 177029 || |||||||| ||||||| || |||||| || |||||||| |||||| | | ||||| Sbjct 47076732 ATTTTTGTCATTATGGTGGTCTTTTTTGTGTTCTGGACACCTTACAACCTGCTCCTCCTT 47076791 Query 177030 CTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGAC 177089 | ||| ||||| | | ||||| | | ||| || ||||| | ||||| Sbjct 47076792 TTCTCTGCCTTTGA-TCTGTCCTTCCTGGATAACTGTGAGC--GGAGCAAACAGCTGGAC 47076848 Query 177090 ATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATC 177149 ||||| || | ||| | | ||| |||| ||||| ||||||||||| | ||| Sbjct 47076849 ATGGCCAAGCACGTGACAGAGGTGATCGCCCACACCCACTGCTGCATCAACCCCATCATC 47076908 Query 177150 TACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGT 177208 ||||| ||||||||||||| ||| ||||| ||||| ||||||||| |||| | || Sbjct 47076909 TACGCCTTCGTGGGGGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTGCACAGGAATGT 47076967 Query 177209 GGCCATCTACCTCTGCAAGTACATCCCCTTC 177239 | |||| || | |||| ||||| |||||| Sbjct 47076968 GACCATGCACTTGAGCAAATACATTCCCTTC 47076998 Score = 111 bits (122), Expect = 2e-19 Identities = 225/331 (68%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 176872 TCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGA 176931 |||| ||||||||||| | |||| |||||||| | || ||||| | |||| Sbjct 47018869 TCATGTTGCCTCTGCTGGTCATGGTGTTCTGCTACACAGGCATCATCAGCATCCTGTGTC 47018810 Query 176932 GGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCT 176991 | || |||| | |||||||| ||| ||| || | || ||||| | ||||||| | || Sbjct 47018809 GCCGGCCCAACGAGAAGAAGGTCAAAGCCGTCCGACTGATCTTCGCCATCATGATCATCT 47018750 Query 176992 ATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCC 177051 |||| | || ||||| || |||||| | | | | | | ||| ||||| | | | | Sbjct 47018749 TTTTTCTCTTCTGGACCCCATACAACCTGGCTGTGTTTGTTTCT-GCTTTCCAGGAGCAC 47018691 Query 177052 TTCTTAAC---CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 177108 | || || || | | | ||| |||||| | ||| |||| |||| | ||||| Sbjct 47018690 ATGTTCACCAACTTCTGCGAGCA--GAGCAGGCAGCTGGCTGTGGCCCTGCAGGTAACAC 47018633 Query 177109 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 177168 | | | |||||||| ||||| || |||||||||| ||||| | || ||||| |||| Sbjct 47018632 AGATGATTGCCTACACTCACTGCTGTGTCAACCCAGTCATCTATGTCTTTGTGGGTGAGA 47018573 Query 177169 AGTTTAGAAGACACCTGTACCACTTCTTCCA 177199 ||||| | | ||||| || ||||||| Sbjct 47018572 AGTTTCGGAAGTACCTGCGTCAACTCTTCCA 47018542 Score = 111 bits (122), Expect = 2e-19 Identities = 225/331 (68%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 9986 TCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGA 10045 |||| ||||||||||| | |||| |||||||| | || ||||| | |||| Sbjct 47018869 TCATGTTGCCTCTGCTGGTCATGGTGTTCTGCTACACAGGCATCATCAGCATCCTGTGTC 47018810 Query 10046 GGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCT 10105 | || |||| | |||||||| ||| ||| || | || ||||| | ||||||| | || Sbjct 47018809 GCCGGCCCAACGAGAAGAAGGTCAAAGCCGTCCGACTGATCTTCGCCATCATGATCATCT 47018750 Query 10106 ATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCC 10165 |||| | || ||||| || |||||| | | | | | | ||| ||||| | | | | Sbjct 47018749 TTTTTCTCTTCTGGACCCCATACAACCTGGCTGTGTTTGTTTCT-GCTTTCCAGGAGCAC 47018691 Query 10166 TTCTTAAC---CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 10222 | || || || | | | ||| |||||| | ||| |||| |||| | ||||| Sbjct 47018690 ATGTTCACCAACTTCTGCGAGCA--GAGCAGGCAGCTGGCTGTGGCCCTGCAGGTAACAC 47018633 Query 10223 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 10282 | | | |||||||| ||||| || |||||||||| ||||| | || ||||| |||| Sbjct 47018632 AGATGATTGCCTACACTCACTGCTGTGTCAACCCAGTCATCTATGTCTTTGTGGGTGAGA 47018573 Query 10283 AGTTTAGAAGACACCTGTACCACTTCTTCCA 10313 ||||| | | ||||| || ||||||| Sbjct 47018572 AGTTTCGGAAGTACCTGCGTCAACTCTTCCA 47018542 >seq56 Length=43217229 Score = 192 bits (212), Expect = 7e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 41711005 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 41710946 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||||||||| ||||||||||||||||| ||||| | |||||| | || Sbjct 41710945 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41710886 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||||||||| ||||| ||||| Sbjct 41710885 ACGTAGAACTGGCAGAGGGTGTGGCAGGGAGGCAGCGCCAT 41710845 >seq34 Length=50712660 Score = 132 bits (146), Expect = 6e-26 Identities = 124/157 (79%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | ||||| || ||||||||| || |||||||||||||||||| | || | ||| Sbjct 16176498 CAGCGTCGCAGCCGCAGCCTGAGGGTCTTCAGCTTTTCCCCCAGGGAGCTTACATGTTCC 16176439 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | || || || |||| ||||||||||||| | || ||||||||| Sbjct 16176438 TTGAT---GTCTGGGTCATGATTTTCTGCCTTGGGCATCACCTCCACTAGATAAAACTGG 16176382 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 16176381 ATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 16176345 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 137941 GTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATGGCCTTGTAGACC 138000 ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 16178530 GTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTCATGGCTTTGTAGACG 16178471 Query 138001 CCTTTTTCCTGGAGCT 138016 ||||| || ||||||| Sbjct 16178470 CCTTTCTCTTGGAGCT 16178455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590053705869240