Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq889 232 8e-56 seq600 127 2e-24 >seq889 Length=60641186 Score = 232 bits (256), Expect = 8e-56 Identities = 218/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 24422840 AGCAGAGCTTCGATGTCTGGCTCGATGTCGATGGTAGGAAAGCGGCGGCTGTACCTGCGC 24422899 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||| | ||||||| ||||||||| || ||||||| |||||| || ||| Sbjct 24422900 ACCGGAACACCGTCGGGGCCCACCAGGAACTTCTCAAAATTCCAGGACACGTCATTACGG 24422959 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || || |||||| |||| || |||||| ||| ||||| | ||||||||| Sbjct 24422960 CATACCGGGGACCAGATGATGAACTTAGGGTCGGTCATGAGCGCAATGGGGTCGTCGCTG 24423019 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||||||| ||||||||||| ||||||| |||||| |||||||| | ||||| || ||| Sbjct 24423020 GGCGCCGGGAGGGCCTCTCGGAGGAAGGTGAAGAGTGGATGTGCTTTCGCACCATTCACC 24423079 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCC 83334 ||||||||||||||||| | ||||| || ||||| || Sbjct 24423080 TCGCACTTCTCGAAGAGAGTGAAGTTAGGTTCGAACCC 24423117 >seq600 Length=10546185 Score = 127 bits (140), Expect = 2e-24 Identities = 191/266 (72%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 6883239 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 6883181 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| | ||| | ||||||| Sbjct 6883180 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGGAAGCAGTACAACTGCA 6883121 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | || |||| ||||| Sbjct 6883120 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGGCTCGCATCAGGCTGATCCGCCACTAC 6883062 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| |||||||||| ||||| ||| Sbjct 6883061 GTGCAGCTGCTCTACCCCCGGGCCAAGAACGACCGCGTGTGGACGCTGGAGTTCGTGGGC 6883002 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||| ||||||| Sbjct 6883001 AAGCTGGACGAGCGCTGCAGGCGCCG 6882976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608772973215240