Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq87 179 4e-40 seq578 149 6e-31 seq1 123 3e-23 seq889 98.7 1e-15 seq29 93.3 4e-14 seq278 91.5 2e-13 seq789 87.8 2e-12 seq89 87.8 2e-12 >seq87 Length=1495935 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || ||| Sbjct 1202945 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 1203004 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 1203005 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203064 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | |||||||||| |||||||||| Sbjct 1203065 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 1203124 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || ||||| ||||||| || Sbjct 1203125 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1203171 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| ||||| ||||||||| |||| || || ||| Sbjct 1202716 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 1202775 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1202776 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1202835 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||||| |||||||| Sbjct 1202836 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 1202895 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || ||| ||||| |||| || || Sbjct 1202896 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1202943 >seq578 Length=10717883 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| || || ||||| ||||||| | | || || || || Sbjct 1250304 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGGTGGAGCCC 1250363 Query 40747 ACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | || || | | ||||| || || | || ||||| ||||| || | || Sbjct 1250364 AGCGACACCACTGAGAATG-TGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGA 1250422 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | ||||| || ||||| Sbjct 1250423 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTA 1250482 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| |||| ||||| || ||| ||||| |||| || || Sbjct 1250483 CAACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250533 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 1250535 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 1250594 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || ||||| ||||| || | |||||| Sbjct 1250595 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250654 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1250655 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1250714 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| ||||| || ||| ||||| |||| || || Sbjct 1250715 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250761 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 1250763 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 1250822 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || ||||| ||||| || | |||||| Sbjct 1250823 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250882 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1250883 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1250942 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || ||||| || || | || ||||||| || Sbjct 1250943 ATCCAGAAAGAGTCTACTCTGCACCTGGTCCTCCGTCTGAGGGGTGG 1250989 >seq1 Length=88624873 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||||||||| |||||||| ||||| ||||| || || || || || | Sbjct 4804260 TGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCGGCTATCTTCT 4804319 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | |||||| |||||||||| || ||| ||||||||||||| ||||| Sbjct 4804320 GGCTGAAGAAGAGAGGCCTCCTGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 4804379 Query 117162 ACGAGG 117167 |||||| Sbjct 4804380 ACGAGG 4804385 Score = 100 bits (110), Expect = 3e-16 Identities = 93/116 (80%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| |||||||||||||| ||||||| || |||||||||||||| || Sbjct 4801454 GGTGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCCGAGGCCCGCTGCTTCTACGGCTTCCA 4801513 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916 |||| ||| |||||||| ||||| || ||||| | || ||||||||||| || Sbjct 4801514 GATCCTCATCGAGAACGTCCACTCCGAGATGTA--CAGCCTGCTCATCGACACCTA 4801567 >seq889 Length=60641186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/193 (73%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || | |||||| ||||||||| | || || || ||| Sbjct 60498661 ATGCAGATATTCGTGAAGACCCTAATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 60498720 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| || | |||| | ||| | | ||||| || |||||||| | ||||| Sbjct 60498721 GACACCAGTGAGAATG-TCAAAGCCAAA-TCCAAGACAAGGAAGGCATCCCACCCGACCA 60498778 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || || | || ||||||||||||| |||| || || ||| |||||||| Sbjct 60498779 GCGGCTCCTGATATTTGCCAGCAAACAGCTGGAGGACGGTCGGACTCTCTCAGACTACAA 60498838 Query 40869 CATCCAGAAGGAG 40881 ||| ||||| ||| Sbjct 60498839 CATTCAGAAAGAG 60498851 >seq29 Length=3441549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || || ||| |||| ||||| || ||||| || ||| |||| ||||| || ||| || Sbjct 3375281 GGGGAACGCGTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCG 3375222 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | || || ||||| |||||||| || |||||||||||||| || || ||| || ||| Sbjct 3375221 TCGATCTTCTGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTC 3375162 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| || |||| Sbjct 3375161 ATCAGCAGAGATGAGG 3375146 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| | ||||||||||| || || || || ||||| || |||||| ||| Sbjct 3377564 GAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGAC 3377505 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| ||||| || || |||||||| || || ||||| | ||||||||| Sbjct 3377504 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTG 3377451 >seq278 Length=24422027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||||| ||| | ||||||| || ||||| |||| |||| | || || || || Sbjct 19077871 AAAATGCAAAGCTTCATGGAAACGCTTACAGGCAAGACCACCACCCTGGAGGTGGAGCCC 19077930 Query 40747 ACCGACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | ||| || | | |||| || |||| | || || || || || || | Sbjct 19077931 TGCAACACCACTGCGAATG-TGAAGGCCAACATTCAGGCTAACGAAGGTATTCCTGCAGG 19077989 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || || | |||||| ||| |||||| ||| |||| || | |||| || ||||| Sbjct 19077990 GCAACAGAGGCTCATCCACGTGGGCAAGCAGTTGGAAGATGGTTGCACTCTTTCTGACTA 19078049 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | | ||| ||||| ||||| || || ||||| | ||| Sbjct 19078050 CAACATCCTGAAAGGGTACACTCTGCACCTAGTCCTGTGCCTGAGGAGTGGC 19078101 >seq789 Length=7921018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||||||||| || ||||| | ||||||||| || | || || || Sbjct 5846961 AAGATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCC 5847020 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | ||| | |||| || || | || || || || || || | || Sbjct 5847021 TCCGACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 5847080 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| | || |||| | || || || ||||| || | ||||| | || ||| Sbjct 5847081 CAGCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGACGCACTTTGTCTGATTAC 5847140 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || | |||| |||| || ||||| |||||| Sbjct 5847141 AACATTCAAAGGGAGTCCACTCTCCATCTTGTGTTG 5847176 >seq89 Length=40145203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || | || || | |||| ||||| ||| Sbjct 36668910 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGAACACCATCCTCGAGGTCGAGCCCAGT 36668851 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | |||| ||||| | ||||| ||| ||||||| | || ||| Sbjct 36668850 GACACCAAG-------TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAG 36668798 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||| ||||||||||||| || | | || ||| ||||||||| Sbjct 36668797 CAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAAC 36668738 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || ||| |||| || || || || || || || | || || Sbjct 36668737 ATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36668691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199035608560