Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq87 111 1e-19 seq789 109 5e-19 seq578 93.3 4e-14 seq89 86.0 5e-12 >seq87 Length=1495935 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| | |||||| ||| || Sbjct 1203153 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCC 1203094 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || | |||||| || || || ||||||||||||||| Sbjct 1203093 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1203034 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||||| ||| | || ||| Sbjct 1203033 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 1202974 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 1202973 CCAGTGAGGGTCTTCACGAAGATCTGCAT 1202945 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || | |||||| ||| Sbjct 1202929 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATC 1202870 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| || | |||||| || || || |||||||||||||| Sbjct 1202869 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 1202810 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | || | |||||| || ||| ||||||| ||| | || Sbjct 1202809 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 1202750 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || |||||||| Sbjct 1202749 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1202717 >seq789 Length=7921018 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | |||| || ||||| |||||||||||||||| Sbjct 5847191 ACCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGA 5847132 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||| || || || || ||| | |||| || | |||||||| ||||| Sbjct 5847131 CAAAGTGCGTCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5847072 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| ||| || || || || | ||| | ||||| | | ||| || Sbjct 5847071 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAAC 5847012 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||| | || | || || || |||||||| ||||||||||| Sbjct 5847011 CTGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5846964 >seq578 Length=10717883 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||||||||| || |||||||| || | |||||| ||| || Sbjct 1250971 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1250912 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || ||||| ||||| || || || Sbjct 1250911 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 1250852 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| || || | ||| | || ||| Sbjct 1250851 ATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTG 1250792 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 1250791 CCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 >seq89 Length=40145203 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/209 (69%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||||||||| |||||||| || | ||| | |||||| Sbjct 36668709 ACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCC 36668768 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| | ||| | || || | |||||| || || || |||| |||||||||| Sbjct 36668769 AGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGG 36668828 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | |||||| || ||||||||||| | | | || Sbjct 36668829 ATTTTGGTTTTGACTT-------GGTGTCACTGGGCTCGACCTCGAGGATGGTGTTCTTA 36668881 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 36668882 CCCGTCAGGGTCTTCACGAAGATCTGCAT 36668910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813845438652