Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq578 118 7e-22
seq87 114 8e-21
>seq578
Length=10717883
Score = 118 bits (130), Expect = 7e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | |||||||||||| | ||| |||||||| ||||||||||| ||
Sbjct 1250761 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1250702
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||||||||| || ||||||| ||||||||| ||
Sbjct 1250701 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1250642
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || || || || ||||| ||| | || | || | ||| | | || ||
Sbjct 1250641 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1250582
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|||| |||||||| ||||| || ||||| ||||| ||||||||||||
Sbjct 1250581 TCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATC 1250534
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | |||| |||||||| ||||||||||| || || || | ||
Sbjct 1250974 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250915
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| |||||||||||| || ||||||| ||||||||| || | || || || ||
Sbjct 1250914 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1250855
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | || | ||| | | || || |||| ||||||||
Sbjct 1250854 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 1250795
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||| || || || ||||| ||||||||||||
Sbjct 1250794 TTGCCAGTCAGTGTCTTCACGAAGATCTGCATC 1250762
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | |||||||||||| | ||| |||||||| ||||||||||| ||
Sbjct 1250533 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1250474
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| |||||||||||| || ||||||| ||||||||| ||
Sbjct 1250473 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1250414
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || || || || ||||| | ||| | || | | | ||| | | || ||
Sbjct 1250413 ATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACC 1250354
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||||| ||||| || || |||||||| ||||| |||||
Sbjct 1250353 TCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCAT 1250307
>seq87
Length=1495935
Score = 114 bits (126), Expect = 8e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || || ||||| ||||||||||||||
Sbjct 1203171 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1203112
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| ||||||||| ||||| || |||| ||||||||| |||
Sbjct 1203111 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203052
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | || | || | | || ||
Sbjct 1203051 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1202992
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | |||||||| ||||| ||||| || ||||| ||||||||||||
Sbjct 1202991 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATC 1202944
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | |||||||||||| | || || ||||| ||||||||||| ||
Sbjct 1202943 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1202884
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || |||| ||||||||| ||||| || |||| ||||||||| |||
Sbjct 1202883 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1202824
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | || | || | | || ||
Sbjct 1202823 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1202764
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||| ||||| || ||||| |||||||||||
Sbjct 1202763 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1202717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323059671875360
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