Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 seq29 82.4 7e-11 >seq1 Length=88624873 Score = 98.7 bits (108), Expect = 9e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || ||||| ||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct 4811181 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4811122 Query 16007 ATAAAATCAAAAGGATTTT 16025 ||||||||||| ||||||| Sbjct 4811121 ATAAAATCAAAGGGATTTT 4811103 >seq29 Length=3441549 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||| || |||| ||||||||||| || || | ||| |||||||| |||||||| | Sbjct 3376360 TTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGT 3376419 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || ||||| || || || || || | ||| || | ||||| ||||| Sbjct 3376420 TTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3376474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493898436600