Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3 1065 0.0 seq134 143 2e-29 seq322 89.7 4e-13 >seq3 Length=4952767 Score = 1065 bits (1180), Expect = 0.0 Identities = 1145/1509 (76%), Gaps = 33/1509 (2%) Strand=Plus/Plus Query 107144 AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTG 107203 |||| || ||| |||||||| ||||| || |||| | ||| ||| | ||| | | Sbjct 2812622 AGGCTGGCCTTTGCTGAGGATGTTTGTTTAAAGAA-ATGCCTAG-TTTGCTGTCAGTATA 2812679 Query 107204 GAGTTGAACTTGATGTTC-------------TG---GATTAGTTTGTAATTAAAGGCATT 107247 |||||||||||||||||| || |||| | |||||| | | | | || Sbjct 2812680 GAGTTGAACTTGATGTTCCCATGAGAATGTGTGCATGATTTGCTTGTAACTGAGGTC-TT 2812738 Query 107248 TTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTCCC 107307 ||||||| ||||||| | |||||| ||| |||| ||| |||| | | | Sbjct 2812739 TTGTTCTACCCAAGGAGCCTGTCCTCCTCCT--CCTG--------CTCCCCTGGTG-CGC 2812787 Query 107308 ATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCC 107367 | ||| ||| ||||||| || || ||| || |||| ||||| || Sbjct 2812788 TGGCTGGGAAAATGATCCCATGGAAGA-GA--CTCTGCTGGCATTATCACATGTGGATCC 2812844 Query 107368 TGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTG 107427 ||||||| || ||| |||||||| |||| || ||| | | | ||| || | || |||| Sbjct 2812845 TGGGCTGTTACATGGTGCTGGCCCTTGTGGCTTTGAAAGTGACTCTCCGGCTGAAGTGTG 2812904 Query 107428 ATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGT 107487 | | || | || || |||| |||| ||| || | |||| |||||||| | || | Sbjct 2812905 ACTTCGAGCACCTGTATTTGGACTCCAAGGAGTTTCCCGCTCAGTACTGTAGGAATATCT 2812964 Query 107488 TGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAG 107547 |||||| ||||| ||||||||| |||| | |||||||||||| ||| ||| ||| Sbjct 2812965 TGTACAGATCCCTGATGCTGCCAGCCCAGAGGTTCATCAACTGTTCGGGGGTCAGCAGAG 2813024 Query 107548 GGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGT 107607 ||||||| ||||||||| ||||||| | || | |||||||| || |||||||||||| Sbjct 2813025 GGGACCACGAAGCAGTGATCCAGGCTGTGCTGAATAACCTGGAGGTCAAGAAAAAGCGGA 2813084 Query 107608 CGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCC 107667 |||| || ||| | | ||| || || || ||||||| ||| ||||| |||| Sbjct 2813085 AGCCTTTCTCTGAGGCGGACTACATCTCTATGACTCGAGACTGCGAGAAATTCAAAGCCC 2813144 Query 107668 AAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACT 107727 | ||| |||| | ||| | | ||||| ||||| ||| |||||||||||| || |||| Sbjct 2813145 AGCGGAGGTTCGTGCAGGTGGCCCTGAGCAAAGAGGAGTCAGACTTCCCCATCGCGTACT 2813204 Query 107728 CGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCC 107787 | |||||||| || ||||| || || |||||||| ||||||||||||| ||||| | Sbjct 2813205 CTATGGTGGTTCACGAGAAAATCGAGAACTTTGAGAGGCTGCTGCGAGCTGTGTACATGC 2813264 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGG 107847 | ||||| | |||||| |||||||||| ||| || ||||| | ||| ||||||| | Sbjct 2813265 CGCAGAATGTGTACTGTATCCACGTGGACAAGAAATCTCCAGAAATGTTCCAAGAGGCAG 2813324 Query 107848 TCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGG 107907 ||| |||||| |||||||||||| || |||||||| ||||| ||| |||| || |||| Sbjct 2813325 TCAGGGCCATCGCTTCCTGCTTCCCAAACGTCTTCATAGCCAGCAAGCTGGTTCCCGTGG 2813384 Query 107908 TTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGA 107967 |||| |||||||||||||| ||||| |||||||||||||| ||||| |||||||||| || Sbjct 2813385 TTTACGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGCATGGAGGACTTGCTCCGGA 2813444 Query 107968 GCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCA 108027 | |||||| |||| ||||| |||||||| || ||||||||||| ||||||||||||| Sbjct 2813445 GTCCAGTGCGGTGGACCTACTTGCTGAATACCTGTGGGACAGACTTTCCCATAAAGACCA 2813504 Query 108028 ATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG 108087 | || |||||||||| |||||| | ||||||||| || |||||||| |||||||| || Sbjct 2813505 ACGCTGAGATGGTCCGGGCCCTGAGGATGTTGAACGGGAAGAACAGCATGGAGTCAGAAA 2813564 Query 108088 TACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT 108147 | || |||| |||||||| || |||||||| | ||| | ||||| |||| ||| Sbjct 2813565 TCCCCAGCGAGTACAAAAAAACCCGATGGAAATATCACTACGTGGTGAAGGACAAGTTGT 2813624 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 || |||||||||| |||||| ||||||||| | || || |||||||||| || |||| Sbjct 2813625 ACATAACCAGCAAGAAGAAGGAGCCTCCCCCTTACAACGTAACCATGTTCACCGGCAATG 2813684 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAA 108267 |||| ||||||| ||||| | ||| ||||| || ||| || | |||||||||||||| Sbjct 2813685 CCTACATTGTGGCTTCTCGGGACTTCGTCCATCACGTCCTAAATAACCCTAAATCCCAGC 2813744 Query 108268 GACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTC 108327 ||| | |||||||| ||||||||||| || || |||||||| |||||||||||||| | Sbjct 2813745 AGCTGATCGAATGGGTGAAAGACACCTACAGTCCTGACGAACATCTCTGGGCCACCCTCC 2813804 Query 108328 AGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACA 108387 |||| || || |||||||| |||||| || || |||||||| ||||||| |||| Sbjct 2813805 AGCGGGCCCCCTGGATGCCCGGCTCTTCGCCCTTGCATGCCAAGTATGACATCTCGGACA 2813864 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGG 108447 |||| ||||| |||||||| |||||||||||| | || ||||| || ||||| ||||| Sbjct 2813865 TGACCGCCATTGCCAGGCTGGTCAAGTGGCAGCAACATGAGGGTGACATCAGCCAGGGGG 2813924 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | ||||||| ||| |||||||| |||| ||| |||||||||||||||| |||||||||| Sbjct 2813925 CACCTTATGGACCTTGCTCTGGGGTCCACCGGCGGGCCATCTGCATTTATGGGGCCGGGG 2813984 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGG 108567 ||||| ||||||| || ||||| || || || ||||| |||||||||||||| | ||||| Sbjct 2813985 ACCTGCACTGGATGCTGCAGAATCACCATCTGTTGGCCAACAAGTTTGACCCAAAGGTGG 2814044 Query 108568 ATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTG 108627 ||||||| || || |||||| | ||||||||||| ||||| |||||||| |||||| || Sbjct 2814045 ATGATAATGTTCTTCAGTGCCTGGAAGAGTACCTGCGTCACAAGGCCATTTATGGGGTTG 2814104 Query 108628 AACTTTGAG 108636 || |||| Sbjct 2814105 GGCTGTGAG 2814113 >seq134 Length=33920511 Score = 143 bits (158), Expect = 2e-29 Identities = 581/898 (65%), Gaps = 53/898 (6%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||| ||| || |||||| ||||| ||||| || ||||||||| | || Sbjct 27407383 CCCCTTAGCAAAGAGGAGGCAGGCTTCCCGATTGCGTACTCCATAGTGGTCCATCACAAA 27407442 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | |||| |||| || | ||| | ||| |||||||| | || || || Sbjct 27407443 ATCGAGATGCTTGACAGGCTTCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 27407502 Query 107808 CACGTGGATGTGAAGTCCCCAGAG-ACT--TTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || || |||| ||| |||| || ||||| || | ||| ||| Sbjct 27407503 CATGTGGACAGAAAATC---AGAGGACTCCTTCATAGCCGCGGTGAAAGGCATCGCGTCC 27407559 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| |||||||| || ||| ||||| || || || ||| | Sbjct 27407560 TGTTTCAGGAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTCTACGCATCGTGGAGC 27407619 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGA 107982 | ||||| |||||||||||||| ||| | ||| | || |||| | || || |||| Sbjct 27407620 CGGGTGCAGGCTGACCTGAACTGCATGAAGGACCT-CTACAGA-ATGAGCGCGGACTGGA 27407677 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||| | | || || |||| || || ||||| || ||||| || || ||| Sbjct 27407678 AGTACCTGATCAACCTTTGTGGGATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCA 27407737 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGT 108099 | |||||| ||| | |||| | |||||| ||||| | | || | || || | Sbjct 27407738 GGAAGCTCAAGTCGTTCATGGGTGAAAACAGTCTGGAGACGGAGAAGATGCCATCCCA-- 27407795 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATG---------------AGGTGACAGACACAC 108144 |||| | | | ||||| | ||||| || |||||||||| Sbjct 27407796 -CAAAGCAGAAAGGTGGAAGAGGCACTATGCAGTTGTCGACGGGAAGCTGACAGACAC-G 27407853 Query 108145 TGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGA 108204 | |||| ||| || | | | ||| || || | || ||| | ||| |||||| Sbjct 27407854 GGGACCC--CCA--AA----ACGCAGCCT-CCGCTCAAAA--CACCTCTTTTCTCAGGGA 27407902 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA-CCCTAAATCC 108263 ||||| ||||||| | | | | ||| |||| | || || | |||| Sbjct 27407903 GCGCCTACTTTGTGGTCAGCAGGGAGTATGTGGGCTATGTGCTGGAAAATGAAGACATCC 27407962 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 ||| | | || |||| ||||||| || ||||| || || | ||||||||||| Sbjct 27407963 GGAAG-TTCATGGAGTGGGCACAAGACACGTACAGCCCTGATGAGTATCTCTGGGCCACG 27408021 Query 108324 CTTCAGCGTGCTCCGTG-GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTC 108382 | || | | ||| || | || ||||| | || ||| |||||| || | || Sbjct 27408022 ATCCAAAG-GATCCCTGAGGCCCCAGGCTCCCTGCCCCTGAACCACAAGTACGACCTATC 27408080 Query 108383 AGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCAT 108442 |||||| ||| | |||||| |||||||||||||||||| || || || | | || Sbjct 27408081 TGACATGCAGGCCGTGGCCAGGTTCGTCAAGTGGCAGTACCTTGAAGGGGACCTGAACAA 27408140 Query 108443 GGGGGCGCCTTATGCACCCTGCTCTGGAATCCAT---CGGAGGGCCATCTGCATTTACGG 108499 ||| ||||| ||| | || || ||| ||||| || || | | ||||||| || Sbjct 27408141 GGGCGCGCCCTATCCCCCGTGTGATGGGGTCCATGTACGCAG---CGTGTGCATTTTTGG 27408197 Query 108500 GGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || |||||| || ||||| || | || || ||| | || || |||||||||||| Sbjct 27408198 AGCTGGGGACTTGACGTGGATGCTGCGCAAACACCACTTTTTTGCCAACAAGTTTGAC 27408255 >seq322 Length=21489822 Score = 89.7 bits (98), Expect = 4e-13 Identities = 254/386 (66%), Gaps = 22/386 (6%) Strand=Plus/Plus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||| |||| || ||||| | || ||| ||||| ||||| | | |||| | || Sbjct 6655382 AAGCAGAGGCTGAATTCCCTTTGGCGTACATCATGGTCATCCATCACCACTTTGACACCT 6655441 Query 107758 TTGAACGGCTGCTGCGAGCCGTGT--ATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||| | | || | || || | | ||||| ||| || || |||||||| |||||||| Sbjct 6655442 TTGCAAGACTCTTCCGGGCTATTTTCATGCC--TCAAAATATCTACTGTGTGCACGTGGA 6655499 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 || |||| | | | |||||||| ||||| || | | |||||||||||| Sbjct 6655500 TGAGAAGGCGACTGCTGAATTCAAAGATGCGGTGGAGCAGTTGCTGAGCTGCTTCCCCAA 6655559 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG----TCCAGAGTGC 107931 | |||| ||||| | | ||| |||||||| || | ||| ||||| | | Sbjct 6655560 CGCCTTCCTGGCCTCCAGGATGGAGCCGGTGGTCTACG----GTGGGATTTCCAGGCTCC 6655615 Query 107932 AAGCTGACCTGAACTGTATGGAAGACTTG-----CTCCAGAGCTCAGTGCCATGGAAGTA 107986 | || |||||| ||||| | ||| || ||||| || ||||| |||||||| Sbjct 6655616 AGGCCGACCTGCACTGTCTAAGGGACCTGGTGGCCTCCA-AG----GTGCCCTGGAAGTA 6655670 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | | || || || |||||| || ||||| | |||||||| ||||| |||| | Sbjct 6655671 CGTCCTCAACACCTGCGGGCAGGATTTCCCACTGAAGACCAACAAGGAGATCGTCCAGTA 6655730 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACA 108072 ||| ||| || || || ||||||| Sbjct 6655731 CCTGAAGGGATTCAAAGGGAAGAACA 6655756 Score = 87.8 bits (96), Expect = 1e-12 Identities = 247/374 (66%), Gaps = 24/374 (6%) Strand=Plus/Plus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||| | |||||| |||||| | || || | | || | ||| || ||||| | Sbjct 6682758 CTTCCCCCTGGCCTACGTCATGGTGCTGCACAAGGACTTCGACACCTTCGAGCGGCTCTT 6682817 Query 107771 GCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCC---CC 107827 || ||||| || || || || | ||||| || |||||||| | ||| || || Sbjct 6682818 CCGCGCCGTCTACATGCCGCACAATGTCTACTGCGTGCACGTGGACGCCAAGGCCGACCC 6682877 Query 107828 AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGC 107887 ||| || || || | | || || | | | |||||||||||| | |||| |||| Sbjct 6682878 CGAG--TTCCACAGCG-CAGTGCAGCTCTTGCTGAGCTGCTTCCCCAACGCCTTCCTGGC 6682934 Query 107888 CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGA 107943 | | | |||| |||||||| || | ||| ||||| | || |||||||||| Sbjct 6682935 CTCCAGGATGGTGCCGGTGGTCTACG----GTGGGATTTCCAGGCTCCAGGCTGACCTGA 6682990 Query 107944 ACTGTATGGAAGACTTG-----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATAC 107998 |||| || ||| || |||| ||| ||||| ||||||||| | | || || Sbjct 6682991 ACTGCCTGAGGGACCTGGTGGCCTCC-GAG----GTGCCCTGGAAGTACGTCATCAACAC 6683045 Query 107999 ATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTT 108058 |||||| || ||||| | |||||||| ||||| |||| | ||| ||| || Sbjct 6683046 CTGCGGGCAGGATTTCCCACTGAAGACCAACAAGGAGATCGTCCAGCACCTGAAGGGATT 6683105 Query 108059 GAAGGGTAAGAACA 108072 || || ||||||| Sbjct 6683106 CAAAGGGAAGAACA 6683119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348255510389094