Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq29 114 2e-20 seq1000 107 2e-18 seq334 87.8 2e-12 >seq5 Length=4632403 Score = 118 bits (130), Expect = 1e-21 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3954350 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3954291 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 ||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||| Sbjct 3954290 GGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3954231 Query 62507 ACTATTTCTAAGACCGTA 62524 ||| ||||| | ||| || Sbjct 3954230 ACTGTTTCTTACACCATA 3954213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||||||||| |||||||| ||||||||||| || | || ||||| || | | || Sbjct 3939186 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTG 3939127 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3939126 CTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGG 3939067 Query 63386 TTCCAAGTATATGGC 63400 |||| ||| || || Sbjct 3939066 CTCCAGGTAAATAGC 3939052 >seq29 Length=3441549 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | |||||||||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| || ||||||||||| | |||||| || || || |||||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| ||||| |||||||| || || || || | Sbjct 3375146 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3375205 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || || || || || || ||||| ||||| ||||| || |||||||||| Sbjct 3375206 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGG 3375265 Query 33724 C 33724 | Sbjct 3375266 C 3375266 >seq1000 Length=59189873 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||| |||||||||| ||| || | |||||||| | ||||| ||||| |||||| Sbjct 32380046 GTTACCTTCTATGATGTATATATTATTCTGCAAGCTTTTGTATTGACCACTGCTGTGTTT 32380105 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||||||||| |||||||| ||||||||| ||| | |||| Sbjct 32380106 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGACTTCAGTAAATTTGGAGCAGG 32380164 >seq334 Length=75508170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 194/287 (68%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 62163 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62222 |||||||| |||| ||| || |||||||| ||||| || || || || || |||| || Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557 Query 62223 ATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62282 | | || | || | ||||||| | | ||||||| |||| | ||| || ||| Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617 Query 62283 AGGTTT-GTAT--TCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | | | ||| |||| | || ||| || | |||||| ||| || || || ||| Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677 Query 62340 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCT 62399 |||||||| | | ||| || | | | | | || || || || || || ||||| Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736 Query 62400 CCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 || |||||||| ||| |||||||| || || |||||| | ||||| Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629792950513680