Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq334 100 3e-16 seq29 98.7 9e-16 seq5 96.9 3e-15 >seq334 Length=75508170 Score = 100 bits (110), Expect = 3e-16 Identities = 198/288 (69%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 36928 GATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGA 36987 || || |||||||| || || |||||||| || || |||| | | || | || ||| Sbjct 7451513 GACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTGAGAACAGTTTCCTGA 7451572 Query 36988 GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAA---ATGT 37044 || || |||| ||| | ||||| | || || | || ||| || | |||| | Sbjct 7451573 GAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGAATTTCTAGTACACTC 7451632 Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 || |||| ||||| | | ||| ||| || || || | |||||| | | || | Sbjct 7451633 TGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCATTCCATA-ACCTC-A 7451690 Query 37105 CTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 || | || | | | || ||| ||| ||||||||||||||| | ||||| || |||||||| Sbjct 7451691 CTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCTCCTGACAATACTCT 7451750 Query 37164 TCTT---GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATT 37208 |||| || || || ||||| ||| | |||||| |||||| ||||| Sbjct 7451751 TCTTCGAGTGTAGATGTTGCTGGTACAAGGTTCAGTGGACTTGTTATT 7451798 >seq29 Length=3441549 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | |||||||| | ||| ||||| || Sbjct 3375148 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3375207 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | ||||| ||||||||||| || || || ||||| || ||||| ||| Sbjct 3375208 AGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCT 3375267 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 3375268 ACCACGCGTTCCCC 3375281 >seq5 Length=4632403 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 |||| |||| |||||||| ||||| || || ||||||| || || || || || ||| Sbjct 3954361 TGTGAATTTCTTACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTA 3954302 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 || |||||||||||||||||||| | |||| || || |||||||||||||| Sbjct 3954301 TAAGGTTCAATGGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGG 3954242 Query 37246 GCTATTAGAAGGCTATTTCTCAATCCAT 37273 || || || | || ||||| | |||| Sbjct 3954241 GCAATAAGTAAACTGTTTCTTACACCAT 3954214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468506463110640