Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq62 291 1e-73 seq3 190 3e-43 seq1000 131 2e-25 seq5 123 3e-23 seq29 102 1e-16 seq334 100 4e-16 >seq62 Length=2171973 Score = 291 bits (322), Expect = 1e-73 Identities = 468/674 (69%), Gaps = 55/674 (8%) Strand=Plus/Plus Query 9244 CTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAG 9303 |||||||| |||||||||||| | ||| |||||||| ||||||| ||||| |||||| Sbjct 2116543 CTTCCAAAGACTGTAACAGATGTAGGAATAGATTGATAATATCCAGGTAGACGCTGATAG 2116602 Query 9304 AGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAA 9363 ||||| ||||| |||||||| || | | |||| || |||||||| ||||||| || | Sbjct 2116603 CAGCTAATACATACTCTTCAGGAGATAACGTATGCATCAGTGAGTGAATGTCATAAATGA 2116662 Query 9364 TGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTT 9423 | ||||| ||||| | |||| | || |||| | || ||| |||| ||| ||||| | Sbjct 2116663 TAAATCCACAGAAAAGAAGGACTCCTCCGGCAGCTAAGATCAGTTCCATTGTCTCACTAT 2116722 Query 9424 GCACAAATATCCTCAAAAGTCCTGACAAAATTAAAATCCACAAAGTAACAAACAATCCTG 9483 | | ||| ||| |||| | |||||||| | | |||||| |||| Sbjct 2116723 GAAAAAACATCTTCAAGAATCCTGACAGGA---------------CAGCAAACAGCCCTG 2116767 Query 9484 CTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACA 9543 |||||| ||||||||| |||||||| |||||| ||||||| |||||| | ||||||||| Sbjct 2116768 CTCCAAATTTACTGAAGTCTCTCTTGAATTGTAAAGTATATACAGTCAAACCAAGAAACA 2116827 Query 9544 CTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATC-ATAGAAAGTAACAACA 9602 | |||||| ||| || ||||||| || || || || | | ||||| |||| ||| Sbjct 2116828 CGGCAGTAATCAATATAAAAGCTTTCAGAA--TAATACATAACTGTAGAAGATAACTACA 2116885 Query 9603 GAGGCCAGCGTTAGAGATTCCGACAGTGTAAATCCACAAAGCAGGTATAAATTCAGGGGA 9662 |||| || |||| |||| || ||||| ||| || |||||| | || |||||| Sbjct 2116886 ACTGCCACAGTCAGAGCTTCCAGAAGGGTAAAGCCAAAAGTCAGGTACAGGTTAAGGGGA 2116945 Query 9663 TGTTTATGTCTGTGTAAAGTCAATGCGAAAATCAAGCCTATAGATACGAACATTGATGCC 9722 || ||| ||||| |||||||| ||| || ||||| || | | | |||| Sbjct 2116946 TGCTTAGGTCTGCTTAAAGTCAGTGCAAAGATCAAACCCAAAACTCCGAA---------- 2116995 Query 9723 AATATTAGAACAGGACTCCCTTGTATAATTTTCCGCATGCAG--TCAAAGTATAAAAATA 9780 || |||| | || | || | | ||| || |||||||||||||| | Sbjct 2116996 --------GGCATGACTTTCATGCACAAATGT--TTATGTAGAATCAAAGTATAAAAACA 2117045 Query 9781 CTGCAGTTGTTGCCGTTGTTAAAAGAAATTGTAGACA-AAGGATACCGTAGACTTTTCTT 9839 ||| || | | | | || ||||| | ||||||| |||||| |||| Sbjct 2117046 CTGTAGAGGCTACTG---------GA----GTAGAGAGCAGGATACTGTAGAC-TTTCAG 2117091 Query 9840 AGAAATGCCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCG 9899 |||| ||||||| ||||| |||||||| ||| | ||||||||||||||||||| Sbjct 2117092 AGAAGGGCCATTCAGATGTGTGGTCTGGCAGAGGCCGCGCAGCTGCCATAGTTGAAGTCA 2117151 Query 9900 TCCTCGATGGAGGA 9913 || || || ||||| Sbjct 2117152 TCTTCTATCGAGGA 2117165 >seq3 Length=4952767 Score = 190 bits (210), Expect = 3e-43 Identities = 438/674 (65%), Gaps = 56/674 (8%) Strand=Plus/Plus Query 9244 CTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAG 9303 |||||||| | ||||||||||| | ||| |||||||| ||||||| ||||| |||||| Sbjct 2248061 CTTCCAAA-GATGTAACAGATGTAGGAATAGATTGATAATATCCAGGTAGAGGCTGATAG 2248119 Query 9304 AGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAA 9363 ||||| ||||| |||||||| || | | |||| || |||||||| ||||||| || | Sbjct 2248120 CAGCTAATACATACTCTTCAGGAGATAACGTATGCATCAGTGAGTGAATGTCATAAATGA 2248179 Query 9364 TGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTT 9423 | ||||| | | |||| | Sbjct 2248180 TAAATCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCACCAT 2248239 Query 9424 GCACAAATATCCTCAAAAGTCCTGACAAAATTAAAATCCACAAAGTAACAAACAATCCTG 9483 | | ||| ||| |||| | |||||||| | | |||||| |||| Sbjct 2248240 GAAAAAACATCTTCAAGAATCCTGACAGGA---------------CAGCAAACAGCCCTG 2248284 Query 9484 CTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACA 9543 |||||| ||||||||| |||||||| |||||| ||||||| |||||| | ||||||||| Sbjct 2248285 CTCCAAATTTACTGAAGTCTCTCTTGAATTGTAAAGTATATACAGTCAAACCAAGAAACA 2248344 Query 9544 CTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATC-ATAGAAAGTAACAACA 9602 | |||||| ||| || ||||||| || || || || | | ||||| |||| ||| Sbjct 2248345 CAGCAGTAATCAATATAAAAGCTTTCAGAA--TAATACATAACTGTAGAAGATAACTACA 2248402 Query 9603 GAGGCCAGCGTTAGAGATTCCGACAGTGTAAATCCACAAAGCAGGTATAAATTCAGGGGA 9662 |||| || |||| |||| || ||||| ||| || |||||| | || |||||| Sbjct 2248403 ACTGCCACAGTCAGAGCTTCCAGAAGGGTAAAGCCAAAAGTCAGGTACAGGTTAAGGGGA 2248462 Query 9663 TGTTTATGTCTGTGTAAAGTCAATGCGAAAATCAAGCCTATAGATACGAACATTGATGCC 9722 || ||| ||||| |||||||| ||| || ||||| | | | | |||| Sbjct 2248463 TGCTTAGGTCTGCTTAAAGTCAGTGCAAAGATCAAAACCAAAACTCCGAA---------- 2248512 Query 9723 AATATTAGAACAGGACTCCCTTGTATAATTTTCCGCATGCAG--TCAAAGTATAAAAATA 9780 || |||| | || | || | | ||| || |||||||||||||| | Sbjct 2248513 --------GGCATGACTTTCATGCACAAATGT--TTATGTAGAATCAAAGTATAAAAACA 2248562 Query 9781 CTGCAGTTGTTGCCGTTGTTAAAAGAAATTGTAGACA-AAGGATACCGTAGACTTTTCTT 9839 ||| || | | | | || ||||| | ||||||| |||||| |||| Sbjct 2248563 CTGTAGAGGCTACTG---------GA----GTAGAGAGCAGGATACTGTAGAC-TTTCAG 2248608 Query 9840 AGAAATGCCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCG 9899 |||| ||||||| ||||| |||||||| ||| | ||||||||||||||||||| Sbjct 2248609 AGAAGGGCCATTCAGATGTGTGGTCTGGCAGAGGCCGCGCAGCTGCCATAGTTGAAGTCA 2248668 Query 9900 TCCTCGATGGAGGA 9913 || || || ||||| Sbjct 2248669 TCTTCTATCGAGGA 2248682 >seq1000 Length=59189873 Score = 131 bits (144), Expect = 2e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 9459 ATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGA 9518 ||||| ||| || || | |||||||||| ||||||||| |||||||| ||||||||| Sbjct 32380185 ATCCAAAAACAAATAACTTACCCTGCTCCAAATTTACTGAAGTCTCTCTTAGATTGTAGA 32380126 Query 9519 GTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACA 9578 |||||| |||||| | |||||||||| ||||| |||| | |||||||||| || | | Sbjct 32380125 GTATATACAGTCAAACCAAGAAACACAGCAGTGGTCAATACAAAAGCTTGCAGAATAATA 32380066 Query 9579 TGCACATCATAGAAAGTAAC 9598 | ||||||||||| ||||| Sbjct 32380065 TATACATCATAGAAGGTAAC 32380046 >seq5 Length=4632403 Score = 123 bits (136), Expect = 3e-23 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3954350 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3954291 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 ||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||| Sbjct 3954290 GGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3954231 Query 65300 ACTATTTCTAAGACCGTA 65317 ||| ||||| | ||| || Sbjct 3954230 ACTGTTTCTTACACCATA 3954213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||||||||||| |||||||| ||||||||||| || | || | ||| |||| | || Sbjct 3939186 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTG 3939127 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3939126 CTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGG 3939067 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| || || Sbjct 3939066 CTCCAGGTAAATAGC 3939052 >seq29 Length=3441549 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | ||| ||||| || | ||||| |||||||| |||||||||||||| ||||| Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || ||||||||||| | |||||| || || || |||||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475 >seq334 Length=75508170 Score = 100 bits (110), Expect = 4e-16 Identities = 197/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 64956 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 65015 |||||||| |||| ||| || |||||||| ||||| || || || || || |||| || Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557 Query 65016 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 65075 | | || | || | ||||||| | | ||||||| |||| | ||| || ||| Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617 Query 65076 AGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 65132 | | | ||| |||| | || ||| |||| |||||| ||| || || || ||| Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677 Query 65133 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 65192 |||||||| | | ||| || | | | | | || ||||| || || ||| ||||| Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736 Query 65193 CCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTC 65236 || |||||||| ||| |||||||| || || |||||| | ||||| Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658147040762040