Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq29 114 2e-20 seq5 114 2e-20 seq334 105 1e-17 >seq29 Length=3441549 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | |||||||||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || ||||||||||| | |||||| || || || |||||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475 >seq5 Length=4632403 Score = 114 bits (126), Expect = 2e-20 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3954350 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3954291 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || |||||||| ||| ||||||||||| || || ||||| || || | | ||| Sbjct 3954290 GGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3954231 Query 79179 ACTATTTCTAAGACCGTA 79196 ||| ||||| | ||| || Sbjct 3954230 ACTGTTTCTTACACCATA 3954213 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | ||| Sbjct 3939185 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3939126 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3939125 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3939066 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 3939065 TCCAGGTAAATAGC 3939052 >seq334 Length=75508170 Score = 105 bits (116), Expect = 1e-17 Identities = 198/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 78835 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 78894 |||||||| |||| ||| || |||||||| ||||| || || || || || |||| || Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557 Query 78895 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 78954 | | || | || | ||||||| | | ||||||| |||| | ||| || ||| Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617 Query 78955 AGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCA 79011 | | | ||| |||| | || ||| |||| |||||| ||| || || |||||| Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677 Query 79012 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 79071 |||||||| | | ||| || | | | | | || ||||| || || ||| ||||| Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736 Query 79072 CCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 || |||||||| ||| |||||||| || || |||||| | ||||| Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718240688754840