Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq29 93.3 4e-14 >seq29 Length=3441549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||| ||| |||| |||| |||| ||| || | | || ||||| ||||| | Sbjct 3374161 CTAAAAGTCAGCATCCAATGTAAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 3374220 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | || || || ||||||||||| || || |||||||| || ||||| || Sbjct 3374221 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAAATATTCTC 3374280 Query 13643 CATAAAATCAAATGGATTT 13661 ||| || |||||||||||| Sbjct 3374281 CATGAAGTCAAATGGATTT 3374299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479709224645400