Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-22 seq334 109 7e-19 seq29 102 1e-16 >seq5 Length=4632403 Score = 122 bits (134), Expect = 1e-22 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3954350 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3954291 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||||||||||| ||| ||||||||||| ||||| ||||| || || | | || Sbjct 3954290 GGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3954231 Query 71262 ACTATTTCTAAGACCAT 71278 ||| ||||| | ||||| Sbjct 3954230 ACTGTTTCTTACACCAT 3954214 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || ||||| |||| | ||| Sbjct 3939185 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3939126 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3939125 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3939066 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 3939065 TCCAGGTAAATAGC 3939052 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| |||| || || || || || | | | |||||| ||||| || || || | Sbjct 3949205 GAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAGG 3949146 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||| || || || || | |||||| || || ||||| || || ||| Sbjct 3949145 GCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTGGGCTTCTGGACTCTCA 3949086 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || ||||| || ||||| | ||||| || ||||| || || || Sbjct 3949085 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTACACCAATTCCAATGGGG 3949026 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 3949025 CGATGACGTTTATTTGA 3949009 >seq334 Length=75508170 Score = 109 bits (120), Expect = 7e-19 Identities = 199/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 70918 ATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 70977 || || || |||| ||||| |||||||| ||||| || || || || || |||| || Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557 Query 70978 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 71037 | | || | || | ||||||| | | ||||||| |||| | ||| || ||| Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617 Query 71038 AGGTTT-GTAT--TCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCA 71094 | | | ||| |||| | || ||| ||||||||||| |||||| || |||||| Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677 Query 71095 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCT 71154 |||||||| || ||| || | | | | | |||||||| || || ||| ||||| Sbjct 7451678 TTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736 Query 71155 CCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 || |||||||| ||| |||||||| || || |||||| | ||||| Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783 >seq29 Length=3441549 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||| |||||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || ||||||||||| | ||||| || | || |||||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112933289560