Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq789 86.0 6e-12 >seq789 Length=7921018 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||| | || || || |||| ||||||||||| || |||| || | | Sbjct 5847176 CAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCGTCCA-T 5847118 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| |||||| || ||||||| | ||||||||| ||||| || ||||| || | Sbjct 5847117 CTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 5847058 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || |||| | ||| | ||||| | ||| || || | | || | | Sbjct 5847057 CTTGGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGG 5846998 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || || | ||||||||||| || ||||| Sbjct 5846997 TCCTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5846964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506994556723920