Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq578 82.4 6e-11 >seq578 Length=10717883 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||| || || || || ||||| || |||||||| || | ||| | ||| Sbjct 1250519 CAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATC 1250460 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || ||||| ||| | || |||||||| || || || | ||||||||| || Sbjct 1250459 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCTTTATC 1250400 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || | ||||| | || | |||| || ||| |||| | | ||||| Sbjct 1250399 CTGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACCTCCAGGATGATGGT 1250340 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTA--AACTCTTATAAATGACAAA 20232 ||||| |||| ||||| || || ||||||||||| | || ||| |||||||||| Sbjct 1250339 CTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTGACCTACAATTA-AAATGACAAA 1250282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419571188945811