Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 5e-12 seq29 82.4 7e-11 >seq1 Length=88624873 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| ||| ||||| || ||||| || |||||||| |||||||| ||||| |||||| Sbjct 4811181 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4811122 Query 12923 ATAAAATCGAAAGGATTTTTCG 12944 |||||||| || ||||||| || Sbjct 4811121 ATAAAATCAAAGGGATTTTCCG 4811100 >seq29 Length=3441549 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||||||||| || | | || |||||||| |||||||| |||||||| || || ||| Sbjct 3376377 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3376436 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || || || ||||| | |||||||| | |||||||| Sbjct 3376437 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3376474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965954115662