Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq578 172 1e-37 seq789 150 4e-31 seq322 136 9e-27 seq52 131 4e-25 seq889 109 1e-18 seq223 104 5e-17 seq600 102 2e-16 seq1 95.1 3e-14 seq49 91.5 3e-13 seq278 87.8 4e-12 seq29 87.8 4e-12 seq89 86.0 1e-11 >seq578 Length=10717883 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || |||||||| || || |||||| Sbjct 1250764 ATCCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 1250705 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || || || || ||||| || |||||||| || |||||| Sbjct 1250704 GAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 1250645 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| || || ||||| || | ||| ||||| || || Sbjct 1250644 GGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCC 1250585 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 1250584 ACCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 Score = 170 bits (188), Expect = 4e-37 Identities = 156/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| || || |||||||| ||||| | ||| ||||| || || || || Sbjct 1250959 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 1250900 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || |||||||||||||| ||||| || || Sbjct 1250899 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 1250840 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||||| || || || || || || || ||||| ||||| ||||| Sbjct 1250839 ACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTC 1250780 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1250779 TTCACGAAGATCTGCAT 1250763 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || |||||||| || || |||||| Sbjct 1250536 ATCCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 1250477 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || || || || ||||| || |||||||| || ||||| Sbjct 1250476 GAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGT 1250417 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||| ||||| | || ||||| || ||| ||||| || || Sbjct 1250416 GGAATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCC 1250357 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || | || ||||| ||||| || ||||| || || || ||||||||| Sbjct 1250356 ACCTCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTG 1250303 >seq789 Length=7921018 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || | ||||| || || ||||| | ||| | || ||||| Sbjct 5847172 ACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCGTCCATCTTCC 5847113 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||| |||| || ||||| || ||||||||||| |||||||| ||||| || Sbjct 5847112 AGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGG 5847053 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || ||| || || |||| || || || ||| | Sbjct 5847052 ATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGGTCCTC 5846993 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| |||||||| || |||||||| ||| Sbjct 5846992 CCCGTAAGGGTTTTTACGAAAATCTGCATCTTG 5846960 >seq322 Length=21489822 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || | ||| || || ||||| | ||| || ||||| Sbjct 7411873 ACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGTATGTCCATCTTCC 7411932 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||||| || ||||| || ||||||||||| |||||||| |||||||| Sbjct 7411933 AGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 7411992 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||| | | || ||||| Sbjct 7411993 ATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTTC 7412052 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| ||||||||||| ||| |||| ||| Sbjct 7412053 CCTGTAAAGGTTTTTACAAAAATCGGCATCTTG 7412085 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 |||||| |||| || || ||||||| ||||| || || |||| ||| ||||| || ||| Sbjct 5641046 TCTTCTTGTTGATTACCCACAAAAATCAGCCTTTGCTGCTCAGAAGGAATTCCATCCTTA 5640987 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 |||||||| ||||| |||||||| ||| || || | |||| | |||| | || ||| Sbjct 5640986 TCCTGAATTTTTGCCTTTACATTATCTGTAGTGTCTCAAGGTCCAACCTGGAATGCAATG 5640927 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | |||| | ||||||||| ||||| || || Sbjct 5640926 GTATTCTCTATAAGGGATTTTACAAAAATCTGTATCTT 5640889 >seq52 Length=2480672 Score = 131 bits (144), Expect = 4e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG-TCTTC 104409 || ||||| | || | || || ||||| || || |||| | ||| | || ||||| Sbjct 411645 ACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATCTTC 411586 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 ||||| || |||||||| || |||| || ||||||||||| |||||||| |||||||| Sbjct 411585 CAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 411526 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || |||||||||||||| || || ||||| ||||| || || | ||||| Sbjct 411525 GATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GTGGTGGTCTT 411467 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||| ||||||| || ||||| || ||| Sbjct 411466 CCCCATAACGGTTTTTATGAAAATCTGTATCTTG 411433 >seq889 Length=60641186 Score = 109 bits (120), Expect = 1e-18 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 104358 GTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTT 104417 ||| ||| || ||||||||||| || ||||| || ||||| | |||||| || || |||| Sbjct 60498860 GTAGTGT-GACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCTGTT 60498802 Query 104418 TTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTG 104477 | | ||||| || || | | || || || || || ||||| || || || || || | Sbjct 60498801 TGCTGGCAAATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT-TTGG 60498743 Query 104478 CTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAA 104537 |||| ||||| || ||| || || || || ||||| || || || ||||| || | | Sbjct 60498742 CTTTGACATTCTCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTA 60498683 Query 104538 GTGTTTTTACAAATATCTGCAT 104559 | || || || ||||||||||| Sbjct 60498682 GGGTCTTCACGAATATCTGCAT 60498661 >seq223 Length=78341846 Score = 104 bits (114), Expect = 5e-17 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| | ||||| || || ||| | || | || || | || | || Sbjct 5664061 CTCAGCACAAGATGAAGAGTAGACTCCTTTTGAGTTTTGTTGT--GANCAATTTGT-CCA 5664117 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 |||| |||||||| ||| |||| || ||||| || ||||||| | | ||||||| || Sbjct 5664118 TCTTTCAGTTGTTTACCACCAAAGATCAGCCTTTGCTGATCAGCAAGAATTCCTTTGTTC 5664177 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| |||| || ||||||||||||| || || ||||| ||| ||||| || Sbjct 5664178 TCCTGGCTCTTGGCCTTTACATTTTCTATAGTGTCCAAGGGTTCAGTCTCAAGTGTGATG 5664237 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGT 104571 ||||| || | || ||||||| || ||||| || ||| ||||| Sbjct 5664238 GTCTTCCCCAT-AGGGTTTTTATGAAAATCTGTATCTTGGAGACAGT 5664283 >seq600 Length=10546185 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || ||||| | || || || || ||||| || || ||||| | | | Sbjct 4929169 AGTCTTAGCACAAGATGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAATATGT 4929228 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||||||||| || || | ||| || ||| | || ||||||||| | ||| |||| Sbjct 4929229 CCATCTTCTAGTTGCTTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGCTTCC 4929288 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGG 104495 |||||||| ||||| || ||||||||||||| || Sbjct 4929289 TTATCCTGGATCTTGGCCTTTACATTTTCTATGG 4929322 >seq1 Length=88624873 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || || || || || || || || | ||||| |||||||| ||||| Sbjct 4804252 GGAGAGAG--TGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCG 4804309 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||||||| ||| ||||||| |||||||| |||| || | || ||||| ||||| | Sbjct 4804310 GCTATCTTCTGGCTGAAGAAGAGAGGCCTCCTGCCCGGCCTCACCTTCTCCAACGAGCTC 4804369 Query 269246 ATAAGCAGGGACGA 269259 || ||||||||||| Sbjct 4804370 ATCAGCAGGGACGA 4804383 >seq49 Length=2534360 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || || ||||| | ||| | || ||||| | ||| | ||||||| || ||||| || Sbjct 1109962 TTGTAATCAGACAAAGTACATCCATCTTCCACTTGCATAACAGCAAAGATCAGCCTTTGA 1109903 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTAT 104498 |||| |||||| |||||||| ||||||||||||| || |||| |||||||| |||| Sbjct 1109902 TGATTAGGAGGAATTCCTTCCTTATCCTGAATCTCAGCCTTTATATTTTCTATAGTAT 1109845 >seq278 Length=24422027 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||| | || || |||||||| ||||| | ||| ||||| | || || || | | Sbjct 19078063 CTTTCAGGATGTTGTAGTCAGAAAGAGTGCAACCATCTTCCAACTGCTTGCCCACGTGGA 19078004 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | ||||||||||| | | ||| || ||||| ||| ||||||| || || || ||||| Sbjct 19078003 TGAGCCTCTGTTGCCCTGCAGGAATACCTTCGTTAGCCTGAATGTTGGCCTTCACATTCG 19077944 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | ||| | || || || ||||| || || | ||||| || ||||| |||| | | Sbjct 19077943 CAGTGGTGTTGCAGGGCTCCACCTCCAGGGTGGTGGTCTTGCCTGTAAGCGTTTCCATGA 19077884 Query 104550 ATATCTGCATTTT 104562 | | |||||||| Sbjct 19077883 AGCTTTGCATTTT 19077871 >seq29 Length=3441549 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || ||| |||| | ||||| || || || | || || | ||||| ||||| |||||| Sbjct 3376492 GTGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAG 3376433 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || || || ||||| |||||||| || ||||||||||| | || ||||||||||| Sbjct 3376432 ATCGCCATGGAAAACATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTATAT 3376377 >seq89 Length=40145203 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 104407 TTCTAGTTGTTTTCCAGCA-AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 ||| ||| ||| |||||| ||||| || || ||| |||||||||| |||||||| |||| Sbjct 32895547 TTCCAGTGATTTACCAGCAGAAAATCAGGCTTTGT-GATCAGGAGGAATTCCTTCCTTAT 32895605 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 |||| |||| || |||||||||||||| || || Sbjct 32895606 CCTGGTTCTTGGCCTTTACATTTTCTACAGTGTC 32895639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151352210573748