Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq34 118 9e-22 >seq34 Length=50712660 Score = 118 bits (130), Expect = 9e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| || || | ||||| ||||| ||||| Sbjct 16176356 GGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGATGCCCAAGGCA 16176415 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 |||||||| | || ||||| || ||||| || | |||||||| |||||||||||||| Sbjct 16176416 GAAAATCATGACCCAGACATCAAGGAACATGTAAGCTCCCTGGGGGAAAAGCTGAAGACC 16176475 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | || || || ||||| ||||| Sbjct 16176476 CTCAGGCTGCGGCTGCGACGCTG 16176498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 |||| || || | |||||| ||||| |||||||||||||||||||| ||||||||||||| Sbjct 16178455 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16178514 Query 127439 TCGAGACTTACATG 127452 | || | |||||| Sbjct 16178515 TAGAAGCCTACATG 16178528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430037989527272