Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq234 93.3 5e-14 >seq234 Length=25869412 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||||| |||| | |||||||| |||| || || || ||||||||| | |||| Sbjct 13622258 ATTGGAACTTTGGAAAAATGGGAATAGGAGGTCTGGACAAAGAATTTTCAGATTTTTTTC 13622317 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 |||||||||||||||| || | ||||| || || | || | | || ||||||| Sbjct 13622318 GACGAGCATTTGCTTCCCGAGTATTTCCTCCAGAGATTGTGGAACAGATGGGTTGTAAAC 13622377 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 || | ||||| || | ||| |||| || || || || ||||| || | |||||||| Sbjct 13622378 ATGTTAAAGGCATCCTGTTATATGGGCCCCCAGGATGTGGTAAGACTCTCTTGGCTCGA 13622436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595848679059600