Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq34 114 1e-20 >seq34 Length=50712660 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || |||||||||||||| || | ||| || | Sbjct 16176345 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGA 16176404 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||| |||||||| ||||| || ||| || || || | ||| ||||| || | Sbjct 16176405 TGCCCAAGGCAGAAAATCATGACCCAGACATCAAGGAACATGTAAGCTCCCTGGGGGAAA 16176464 Query 10260 ATCTAAAGACCCTAAGGCTTCGCTTGCG 10287 | || |||||||| ||||| || |||| Sbjct 16176465 AGCTGAAGACCCTCAGGCTGCGGCTGCG 16176492 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 16178455 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16178514 Query 10419 TAGAAGCATACATGACCATGAAA 10441 ||||||| |||||||| | |||| Sbjct 16178515 TAGAAGCCTACATGACAAGGAAA 16178537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547357776946560