Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq34 150 3e-31 seq200 122 1e-22 >seq34 Length=50712660 Score = 150 bits (166), Expect = 3e-31 Identities = 203/283 (72%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| || || ||||| | |||| ||||||||||| | ||| | ||||||||| | Sbjct 34199402 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34199343 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| ||||| || || || || || |||||||| || ||||| || ||| Sbjct 34199342 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34199283 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || ||||| | ||| || || || |||| ||| | ||| |||| ||||| || Sbjct 34199282 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34199223 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || | || || || |||||||| | | ||| |||| ||||| || || ||||| Sbjct 34199222 GCATCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34199163 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| ||||| | ||| ||||| |||||||| || |||| Sbjct 34199162 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCTG 34199120 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| ||||| |||| ||| ||| |||||||| || |||| || |||||||||||| Sbjct 34197789 GTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 34197730 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| || |||| |||||||| || ||||||||||| || || |||||||| || || Sbjct 34197729 CTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGCACCAGACCGAAG 34197670 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || || ||||| | | ||| || || ||||| | Sbjct 34197669 ACCTCCTGGCCCACAGCAAAGCGTGCATGCTCGGGGATGTAGGGTGGGTACATCATCTCT 34197610 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 || || |||||||| | ||| || ||||| || || ||||| |||| Sbjct 34197609 ACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAATTATCT 34197561 Score = 102 bits (112), Expect = 1e-16 Identities = 187/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | |||||||| || || Sbjct 34198320 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCT 34198261 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTT-AATGTAGTCATACTTTGTTTTATCAATC 9438 | | ||| || |||||||| | || ||| || || | | |||| || |||||| Sbjct 34198260 ACTAATATAGAGTTGTTGTAGAGAAACTGTTGAAAGTTATAA-ACTTGGTC--ATCAATT 34198204 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| | || |||| || | |||||||||||||| | |||||||||||||| || Sbjct 34198203 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATG 34198144 Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 || || ||||||||||| | | ||| ||||| || || | |||| || | || Sbjct 34198143 CGGTTCTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 34198085 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584 || || ||||| | ||||| ||||| Sbjct 34198084 ATGATACCCGCTCAAATGCTGTACATA 34198058 >seq200 Length=27928671 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || ||||| || |||||||| ||||||||||||| || Sbjct 11709694 AAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTACTGCGGGGAGCAGATGGGATTT 11709753 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| ||| || ||||||||||| |||||||| | ||||| || ||||| || |||||| Sbjct 11709754 CCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCGATCATACTCTCCCCAAAGATG 11709813 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || ||||| | | || || | ||| ||||| | ||| ||||||||| Sbjct 11709814 GAGTTCGGTAGGCATTTTTCAAGGAGCAACCCTGGGTAGAACTCTAAAGCATCGATGTCT 11709873 Query 8933 CCGTA 8937 || || Sbjct 11709874 CCATA 11709878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708497070110640