Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq5 123 3e-23
seq29 114 2e-20
seq334 100 4e-16
>seq5
Length=4632403
Score = 123 bits (136), Expect = 3e-23
Identities = 109/138 (79%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395
||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 3954350 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3954291
Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455
||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||
Sbjct 3954290 GGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3954231
Query 62456 ACTATTTCTAAGACCGTA 62473
||| ||||| | ||| ||
Sbjct 3954230 ACTGTTTCTTACACCATA 3954213
Score = 100 bits (110), Expect = 4e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274
|||||||||||| |||||||| ||||||||||| || | || ||||| |||| | ||
Sbjct 3939186 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTG 3939127
Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
|| || |||||||||||||| || | ||| || ||| | | || || ||||||| ||
Sbjct 3939126 CTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGG 3939067
Query 63335 TTCCAAGTATATGGC 63349
|||| ||| || ||
Sbjct 3939066 CTCCAGGTAAATAGC 3939052
>seq29
Length=3441549
Score = 114 bits (126), Expect = 2e-20
Identities = 89/106 (84%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||| | |||||||||||| | ||||| |||||||| |||||||||||||| |||||
Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669
||||| || ||||||||||| | |||||| || || || ||||||
Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| |||||||| ||||| |||||||| || || || || |
Sbjct 3375146 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3375205
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || || || || || |||||||| ||||| ||||| || ||||||||||
Sbjct 3375206 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGG 3375265
Query 33446 C 33446
|
Sbjct 3375266 C 3375266
>seq334
Length=75508170
Score = 100 bits (110), Expect = 4e-16
Identities = 197/287 (69%), Gaps = 7/287 (2%)
Strand=Plus/Plus
Query 62112 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62171
|||||||| |||| ||| || |||||||| ||||| || || || || || |||| ||
Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557
Query 62172 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62231
| | || | || | ||||||| | | ||||||| |||| | ||| || |||
Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617
Query 62232 AGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62288
| | | ||| |||| | || ||| |||| |||||| ||| || || || |||
Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677
Query 62289 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62348
|||||||| | | ||| || | | | | | || ||||| || || ||| |||||
Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736
Query 62349 CCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTC 62392
|| |||||||| ||| |||||||| || || |||||| | |||||
Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622922819403960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |