Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 123 3e-23 seq29 114 2e-20 seq334 100 4e-16 >seq5 Length=4632403 Score = 123 bits (136), Expect = 3e-23 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 3954350 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3954291 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 ||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||| Sbjct 3954290 GGACTCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3954231 Query 62456 ACTATTTCTAAGACCGTA 62473 ||| ||||| | ||| || Sbjct 3954230 ACTGTTTCTTACACCATA 3954213 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||||||||| |||||||| ||||||||||| || | || ||||| |||| | || Sbjct 3939186 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTG 3939127 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || |||||||||||||| || | ||| || ||| | | || || ||||||| || Sbjct 3939126 CTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGG 3939067 Query 63335 TTCCAAGTATATGGC 63349 |||| ||| || || Sbjct 3939066 CTCCAGGTAAATAGC 3939052 >seq29 Length=3441549 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | |||||||||||| | ||||| |||||||| |||||||||||||| ||||| Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 ||||| || ||||||||||| | |||||| || || || |||||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| |||||||| ||||| |||||||| || || || || | Sbjct 3375146 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3375205 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || || || || || |||||||| ||||| ||||| || |||||||||| Sbjct 3375206 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGG 3375265 Query 33446 C 33446 | Sbjct 3375266 C 3375266 >seq334 Length=75508170 Score = 100 bits (110), Expect = 4e-16 Identities = 197/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 62112 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62171 |||||||| |||| ||| || |||||||| ||||| || || || || || |||| || Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557 Query 62172 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGA 62231 | | || | || | ||||||| | | ||||||| |||| | ||| || ||| Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617 Query 62232 AGGTTT-GTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCA 62288 | | | ||| |||| | || ||| |||| |||||| ||| || || || ||| Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677 Query 62289 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCT 62348 |||||||| | | ||| || | | | | | || ||||| || || ||| ||||| Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736 Query 62349 CCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGTTC 62392 || |||||||| ||| |||||||| || || |||||| | ||||| Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622922819403960