Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq578 86.0 5e-12 >seq578 Length=10717883 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| || | || ||| | ||||| ||| ||| | Sbjct 1250763 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 1250822 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| || ||||||||||| ||||| || || Sbjct 1250823 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250882 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| || || | | |||||||| || ||||||| Sbjct 1250883 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATG 1250919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | || || ||||| | ||||| || | || | | | || || ||| | Sbjct 1250303 CAAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGGTGGAGCC 1250362 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||| ||| | || || | ||||| || ||||||||||| || || || Sbjct 1250363 CAGCGACACCACTGAGAATGTGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGA 1250422 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| || || | | |||||||| || ||||||| Sbjct 1250423 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATG 1250463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429919594045305