Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq919 127 1e-24 seq12 95.1 8e-15 seq52 87.8 1e-12 seq789 84.2 1e-11 seq578 82.4 5e-11 seq322 82.4 5e-11 >seq919 Length=34509 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 2741 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2800 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2801 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2835 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 6281 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 6340 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 6341 GCCGGTATTTAGCCTTA 6357 >seq12 Length=50730043 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||| ||||||||||||||||||||||| | |||||||||| |||||||||||| | Sbjct 49274619 CTCTCTGCAAAGTTCTTTTCAACTTTCCCTTAGGGTACTTGTTGACTATCGGTCTCGTGC 49274678 Query 20009 TAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 49274679 TGGTATTTAGCCTTA 49274693 >seq52 Length=2480672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC-GT 38163 |||||| | |||||||||| |||||||||||| |||||| |||||||| || | | | Sbjct 411649 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAAT 411590 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || | ||| || || ||||| || || | ||| ||||| | || | ||||| || | Sbjct 411589 CTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTAT 411530 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 || || || ||| ||||| | ||||| || |||||| || | || | | Sbjct 411529 CCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTC-GAGGTGGTGG 411471 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||| | | |||||| | ||| ||||| || || Sbjct 411470 TCTTCCCCATAACGGTTTTTATGAAAATCTGTATCTT 411434 >seq789 Length=7921018 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||| |||||| |||| ||||||| ||||||||||||||| ||| | || Sbjct 5847176 CAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCGTCCATC 5847117 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || |||| || || | ||| ||||| | || | ||||| || || Sbjct 5847116 TTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5847057 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||| ||||| | | ||| || ||||| | | || || || Sbjct 5847056 TTGGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGGT 5846997 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | ||||| | |||||| ||||| |||||||| || Sbjct 5846996 CCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5846961 >seq578 Length=10717883 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| ||||| || |||||| ||| || || || ||||| ||||| Sbjct 1250533 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1250474 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || ||||| || || | || || || | || Sbjct 1250473 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1250414 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || | ||||||||||| || || | || || Sbjct 1250413 ATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACC 1250354 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | | || || || || |||| |||||||||||| || ||||| || Sbjct 1250353 TCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1250304 >seq322 Length=21489822 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||| ||| ||||||||||||||| | || | || Sbjct 7411869 CAACACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGTATGTCCATC 7411928 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || | ||||| || || | ||| ||||| | || | ||||| || || Sbjct 7411929 TTCCAGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7411988 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATG--TAATA 38282 | || || ||| ||||| | | ||| || |||| ||| || | || Sbjct 7411989 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCA--GTCTCGTGGATGATG 7412046 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || |||||||| || || ||| |||| || Sbjct 7412047 GTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7412084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934418728861