Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq578 114 1e-20 >seq578 Length=10717883 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || || |||| || || |||||| | || |||||| | Sbjct 1250306 AATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGGTGGAGCCCAG 1250365 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| | ||| ||||| | || ||| || |||||||| |||||||||||||| Sbjct 1250366 CGACACCACTGAGAATGTGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGACCA 1250425 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| ||||||| | || ||||| Sbjct 1250426 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1250485 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | ||||| | || ||||| || Sbjct 1250486 CATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433311464609765