Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq578 86.0 5e-12 >seq578 Length=10717883 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 ||||||||||| || || ||||| |||| ||||| ||||| | | |||| ||| ||| Sbjct 1250304 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGGTGGAGCCC 1250363 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||||| | || | || || | || || || ||||||||| |||| || Sbjct 1250364 AGCGACACCACTGAGAATGTGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGAC 1250423 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || ||||| || | ||| ||||| || |||||||| | ||| | | || || Sbjct 1250424 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTAC 1250483 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || || | ||| |||| ||| | ||||| Sbjct 1250484 AACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423023857190200