Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq522 95.1 2e-14 seq445 93.3 9e-14 seq1 91.5 3e-13 seq224 84.2 4e-11 seq140 84.2 4e-11 seq107 84.2 4e-11 >seq522 Length=11980250 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 8684527 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 8684468 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 8684467 TCCCGGCAGAGA 8684456 >seq445 Length=61457488 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 23147538 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 23147597 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 23147598 GCCCCACGTTGGGC 23147611 >seq1 Length=88624873 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 57874512 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 57874571 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 57874572 CCCCACGTTGGGC 57874584 >seq224 Length=600545 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||| Sbjct 431232 CCCGGCTAGCTCATTCGGTAGAGCATGAGACTCTTAATCTCATGGTCGTGGGTTCGAGCC 431173 Query 142565 CCAC 142568 |||| Sbjct 431172 CCAC 431169 >seq140 Length=776543 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 752506 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 752565 Query 142563 CCCCAC 142568 |||||| Sbjct 752566 CCCCAC 752571 >seq107 Length=1096862 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||| Sbjct 760228 CCCGGCTAGCTCATTCGGTAGAGCATGAGACTCTTAATCTCATGGTCGTGGGTTCGAGCC 760287 Query 142565 CCAC 142568 |||| Sbjct 760288 CCAC 760291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027795567363171