Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq87 188 1e-42 seq578 167 4e-36 seq89 141 2e-28 seq889 132 9e-26 seq700 98.7 2e-15 >seq87 Length=1495935 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 1203171 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1203112 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| || ||||| || || || || ||||| || || Sbjct 1203111 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203052 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| |||||||| ||| |||||||| | || || Sbjct 1203051 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1202992 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||| ||||| |||||||| Sbjct 1202991 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1202945 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || || ||||| || | | Sbjct 1202934 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 1202875 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| || || || || ||||| || || ||||| ||| Sbjct 1202874 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 1202815 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| ||| |||||||| | || || || | |||| Sbjct 1202814 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTG 1202755 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||||| ||||| ||||||||| Sbjct 1202754 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 1202716 >seq578 Length=10717883 Score = 167 bits (184), Expect = 4e-36 Identities = 170/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 1250752 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1250693 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || ||||| || ||||||||||| Sbjct 1250692 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 1250633 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||| |||||||| ||| | || || |||| ||| Sbjct 1250632 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGGGT 1250574 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || || ||||| ||||| |||||||| Sbjct 1250573 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 Score = 159 bits (176), Expect = 6e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| || || || || || | |||||||| Sbjct 1250971 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1250912 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || ||||||||||| || || || Sbjct 1250911 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 1250852 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || ||| |||||||| ||| | || ||||||| ||||||||| || Sbjct 1250851 ATCTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCCACTTCCAGGGTGATGGTCTT 1250793 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| |||||||| Sbjct 1250792 GCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 Score = 156 bits (172), Expect = 8e-33 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 1250524 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1250465 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || ||||| |||||||||||||| Sbjct 1250464 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCT 1250405 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| |||| || ||| ||||||| ||| | || || |||| | | Sbjct 1250404 TTATCCTGGATCTTGTCCTTCACATTCTCAGTGGTGTC-GCTGGGCTCCACCTCCAGGAT 1250346 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || || || ||||| || ||||| || |||||| || Sbjct 1250345 GATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTG 1250303 >seq89 Length=40145203 Score = 141 bits (156), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || |||| || ||||| |||||| |||||||||||||||||||| || || ||| Sbjct 36668691 CCACCTCGCAGGCACAGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAG 36668750 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| ||||| || | ||| || | ||||||||| || | || || || ||||| Sbjct 36668751 AGAGTCCAACCATCCTCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGG 36668810 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||| ||||||||||| || || | ||||| ||||||| | || || Sbjct 36668811 ATGCTCTCCTTGTCTTGGATTTTGGTTTTGAC-------TTGGTGTCACTGGGCTCGACC 36668863 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || | || ||||| |||||||| ||||| |||||||| Sbjct 36668864 TCGAGGATGGTGTTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36668910 >seq889 Length=60641186 Score = 132 bits (146), Expect = 9e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 68257 AGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACT 68316 || |||| ||| ||||||| || ||||| || || ||||| |||| || || || | || Sbjct 60498863 AGGGTAGTGTG-ACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCT 60498805 Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 | || | ||| ||||| || | ||||||||||| ||||||||||||||||| || | Sbjct 60498804 GTTTGCTGGCAAATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT-T 60498746 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 | || ||||| ||| ||||||| | || || || | ||||||||| || ||| Sbjct 60498745 TGGCTTTGACATTCTCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCA 60498686 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| |||||||||||||| Sbjct 60498685 TTAGGGTCTTCACGAATATCTGCAT 60498661 >seq700 Length=8709706 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/106 (82%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 |||||||||||||| || || || ||||| |||||||||||| |||| || || || Sbjct 8134117 CCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTC-GCTGGGCTCAACCTC 8134059 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||||||| || ||||| |||||||| ||||||||||||||| Sbjct 8134058 AAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCATT 8134013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921586330003320