Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 123 5e-23 seq29 100 5e-16 >seq1 Length=88624873 Score = 123 bits (136), Expect = 5e-23 Identities = 111/137 (81%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| | ||||| |||||| | ||||||||||| |||| || Sbjct 4804250 GGGGAGAGAGTGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCG 4804309 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | ||||||||||| ||| ||| ||| || ||||||| ||||||||||| ||||| || Sbjct 4804310 GCTATCTTCTGGCTGAAGAAGAGAGGCCTC-CTGCCCGGCCTCACCTTCTCCAACGAGCT 4804368 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||||||||||| Sbjct 4804369 CATCAGCAGGGACGAGG 4804385 >seq29 Length=3441549 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | ||||| || |||||||| || || || | || || || ||||||| Sbjct 3375271 TGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3375212 Query 42766 GGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | || | | |||||||| |||||||| || || |||||||||||||| Sbjct 3375211 GGCTGAAGAA-ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 3375153 Query 42825 GACGAGG 42831 || |||| Sbjct 3375152 GATGAGG 3375146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944302240924560