Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq578 129 1e-24 seq87 111 4e-19 seq322 89.7 1e-12 seq700 86.0 1e-11 seq889 84.2 5e-11 seq52 84.2 5e-11 >seq578 Length=10717883 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 1250725 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAG 1250666 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||||||||||||||| || || ||||| || Sbjct 1250665 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1250606 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| || ||||||||||| ||| Sbjct 1250605 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACG 1250546 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1250545 AAGATCTGCAT 1250535 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 1250953 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAG 1250894 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||||||||||||||| || || ||||| || Sbjct 1250893 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 1250834 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 1250833 TCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACG 1250774 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1250773 AAGATCTGCAT 1250763 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 1250497 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAG 1250438 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||| || ||||||||||||||||| || | ||||| || Sbjct 1250437 ATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTC 1250378 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | ||||| | || || || || |||| ||||| || ||||| || || ||| Sbjct 1250377 TCAGTGGTGTCGCTGGGCTCCACCTCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACG 1250318 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 1250317 AAGATTTGCATTTTG 1250303 >seq87 Length=1495935 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || ||||| | || || || |||||| Sbjct 1203135 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 1203076 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || || || || ||||| || || || || || Sbjct 1203075 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTC 1203016 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || || || ||||| ||| Sbjct 1203015 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 1202956 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1202955 AAGATCTGCAT 1202945 Score = 107 bits (118), Expect = 5e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || ||||| | || || || |||||| Sbjct 1202907 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 1202848 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || || || || ||||| || || || || || Sbjct 1202847 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTC 1202788 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || || || ||||| ||| Sbjct 1202787 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 1202728 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 1202727 AAGATCTGCATT 1202716 >seq322 Length=21489822 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||||||| | || ||||||| ||| || |||| || || || || | Sbjct 7411855 CCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGAC 7411914 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || |||| ||||| | ||| || | || |||||||| | || ||| | || Sbjct 7411915 AAAGTATGTCCATCTTCCAGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 7411974 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| Sbjct 7411975 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTC 7412034 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | |||| |||||||| || | || || || || ||| |||| Sbjct 7412035 TCGTGGATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCAT 7412081 >seq700 Length=8709706 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || || |||||||| ||||| || || || || | ||||| | || || || Sbjct 8134117 CCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTCA 8134058 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| || ||||| ||||| ||||||||||||||| Sbjct 8134057 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCATT 8134013 >seq889 Length=60641186 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | ||| || || ||||| || | ||||| | || || Sbjct 60498850 TCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCTGGCAAAT 60498791 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| || | || |||||| ||||| || || ||||||| ||||| || || Sbjct 60498790 ATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTG-GCTTTGACATTC 60498732 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | | || || | || || || || ||||| ||||| || | || ||||| ||| Sbjct 60498731 TCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTAGGGTCTTCACG 60498672 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 60498671 AATATCTGCAT 60498661 >seq52 Length=2480672 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| | || ||||||| ||| || ||||| || || || | | Sbjct 411663 CCACCATGGAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGAC 411604 Query 288307 AGCGTGCGTCCG-TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | ||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 411603 AAAGTACATCCAATCTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGG 411544 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| ||||||||||| || || || || ||||||| || || | ||| || Sbjct 411543 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAAC 411484 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||| | |||||||| | | || || | ||| ||||| || Sbjct 411483 CTCGAG-GTGGTGGTCTTCCCCATAACGGTTTTTATGAAAATCTGTAT 411437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179607077057818