Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq578 109 6e-19 seq89 82.4 8e-11 >seq578 Length=10717883 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | |||| ||||| |||| ||| ||| || || || ||||| |||| Sbjct 1250533 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1250474 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| || || || ||||| | ||||||||| | ||| Sbjct 1250473 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1250414 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || || ||| ||| || | || | || | |||||||| | ||||| Sbjct 1250413 ATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACC 1250354 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | ||||||| ||||| || || || || || |||||||||||||| || Sbjct 1250353 TCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTGAC 1250301 >seq89 Length=40145203 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/192 (69%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| || ||||| || | ||||||| | || || ||||| || | ||||| Sbjct 36668726 CTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCCAGCTGTTTGCTGGCGAA 36668785 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||| || | |||||| || | ||| | |||||||||||| |||||| ||||| Sbjct 36668786 TATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGGATTTTGGTTTTGA---- 36668841 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | ||||| || | || || |||| || || | || ||||| || ||||| || Sbjct 36668842 ---CTTGGTGTCACTGGGCTCGACCTCGAGGATGGTGTTCTTACCCGTCAGGGTCTTCAC 36668898 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 36668899 GAAGATCTGCAT 36668910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543191540009040