Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq578 136 4e-27 seq87 118 1e-21 seq789 105 7e-18 seq889 102 8e-17 seq322 91.5 1e-13 >seq578 Length=10717883 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||||| || | | ||||| | ||| Sbjct 1250518 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250459 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| || ||||| |||||||| || Sbjct 1250458 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCTTTATCC 1250399 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || | ||| ||| ||| || || | || ||||| || | | | |||| Sbjct 1250398 TGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACCTCCAGGATGATGGTC 1250339 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| ||||| ||||| ||||||||||| Sbjct 1250338 TTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1250304 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || |||||||| || | | ||||| | ||| Sbjct 1250746 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250687 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| |||||||| |||||||| || Sbjct 1250686 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1250627 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | || ||||| || | || | |||| Sbjct 1250626 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 1250567 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 1250566 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 1250959 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 1250900 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| |||||||| |||||||| || || || || ||| Sbjct 1250899 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 1250840 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || |||||||| | || | ||||||||| |||| || Sbjct 1250839 ACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTC 1250780 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1250779 TTCACGAAGATCTGCAT 1250763 >seq87 Length=1495935 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | || ||||||| | ||| Sbjct 1202928 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 1202869 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| ||||||||| || || || || || || ||| Sbjct 1202868 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1202809 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 1202808 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 1202749 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | || || ||||| || |||||| Sbjct 1202748 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 1202716 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || ||||||| | ||||| ||||||||||| Sbjct 1203141 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 1203082 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| ||||||||| || || || || || || ||||| || || ||| Sbjct 1203081 GCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 1203022 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | ||||||||| || | || Sbjct 1203021 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 1202962 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1202961 TTCACGAAGATCTGCAT 1202945 >seq789 Length=7921018 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||| | || || || |||||||||||||||| | Sbjct 5847191 ACCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGA 5847132 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| || ||||| || || | || |||| ||||| || ||||| Sbjct 5847131 CAAAGTGCGTCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5847072 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || || ||||||| || | || || || || || Sbjct 5847071 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAAC 5847012 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | || | |||| | || || | |||||||||||||| ||||| || Sbjct 5847011 CTGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5846961 >seq889 Length=60641186 Score = 102 bits (112), Expect = 8e-17 Identities = 143/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| ||||||||||| |||| || || || |||| || ||||| |||| |||| Sbjct 60498853 GACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCTGGCA 60498794 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-AC 64368 | || || || |||||||||| || || ||||| || ||||| | ||| ||||| || Sbjct 60498793 AATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA--TTTGGCTTTGAC 60498736 Query 64369 AACCTCCACT-GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTT 64427 | || |||| || |||| || || || || | || | ||||||||| | | || | Sbjct 60498735 ATTCT-CACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTAGGGTCT 60498677 Query 64428 TTACGAAAATTTGCAT 64443 | ||||| || ||||| Sbjct 60498676 TCACGAATATCTGCAT 60498661 >seq322 Length=21489822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||| |||||||||||| | Sbjct 7411854 ACCACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGA 7411913 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || ||||| | ||| | || |||| ||||| || ||||| Sbjct 7411914 CAAAGTATGTCCATCTTCCAGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 7411973 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | || || | || || || Sbjct 7411974 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTC-CAGGGGTTCAG 7412032 Query 64396 T-TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | | |||||| || || || |||||||| ||||| |||| || Sbjct 7412033 TCTCGTGGATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7412084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499625245151640