Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq34 161 1e-34 seq200 138 2e-27 >seq34 Length=50712660 Score = 161 bits (178), Expect = 1e-34 Identities = 205/282 (73%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| |||||||| || || ||||| ||||| |||| || || || ||||| | Sbjct 34199402 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34199343 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 ||||| || || || || || || || || |||||||| || ||||| || ||| Sbjct 34199342 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34199283 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || || || |||| ||| | ||| |||| ||||| || Sbjct 34199282 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34199223 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||| | || || |||||||| |||| | | | | || || || | || || | ||| Sbjct 34199222 GCATCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34199163 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||||||||| || ||||| || |||||||||||| Sbjct 34199162 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCT 34199121 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| || | || || |||| | || ||| |||| || || || || ||||| || Sbjct 34197801 ATTAGCCGGCTTGTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGC 34197742 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 |||||||| || ||||| || || | |||||| ||||||||||||||||| | || ||| Sbjct 34197741 ACATCGCACACTCTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGC 34197682 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | ||| || || || | ||||| |||||||| || ||||| | | ||| | Sbjct 34197681 ACCAGACCGAAGACCTCCTGGCCCACAGCAAAGCGTGCATGCTCGGGGATGTAGGGTGGG 34197622 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| ||| | || || || |||||||| ||||| || ||||| || || ||||| Sbjct 34197621 TACATCATCTCTACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAAT 34197566 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| | || ||||| || | ||| || Sbjct 34195873 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCCGCCACGGGAGGAAGCGCTCTGGTG 34195814 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||||| ||||||||||||| ||||| Sbjct 34195813 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATGCGCATTGTAAGTT 34195754 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || |||||||| |||| | || |||||| Sbjct 34195753 GGTGGACTGTCGATCAGATGAGATCTGGCT 34195724 Score = 89.7 bits (98), Expect = 7e-13 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || |||| | ||| || | | | || Sbjct 34198311 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCTACTAATATA 34198252 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAAAATCAT 9553 || |||||||| | || |||| | ||| ||| | || | || |||| | Sbjct 34198251 GAGTTGTTGTAGAGAAACTGTTGAAAGTTATAAACTTGG--TCATCAATTTGAAAGGTGT 34198194 Query 9554 CAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGT 9613 |||||| || | ||||||| | || || || || ||||||| || || |||||||||| Sbjct 34198193 CAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATGCGGTTCTGGT 34198134 Query 9614 ACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 |||| || | ||| ||| || | ||| |||||||| | || | ||| || ||||| Sbjct 34198133 ACTGGAATTGCTGGT--TGAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAATGATACCC 34198076 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||| | ||||| ||||| | | || | || ||||| ||||| || Sbjct 34198075 GCTCAAATGCTGTACATAGTCTTCAATCACTATCTTAATCGTTTCTCC 34198028 >seq200 Length=27928671 Score = 138 bits (152), Expect = 2e-27 Identities = 181/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || |||| || || || || || || || || ||||| || ||||||||| Sbjct 11709673 GTGGCCGTGTTGACGAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTAC 11709732 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 ||||||||||||| || ||| ||| || || | |||||| |||||||| | |||| Sbjct 11709733 TGCGGGGAGCAGATGGGATTTCCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCG 11709792 Query 9053 ATGATGCTCTCACCGAAGATGG-CACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 || || ||||| || ||||||| ||| | || |||||| | || || || | ||| Sbjct 11709793 ATCATACTCTCCCCAAAGATGGAGTTCGGTAGGC-ATTTTTCAAGGAGCAACCCTGGGTA 11709851 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | ||| |||| ||| ||||| | | |||||||| || || |||||||| || Sbjct 11709852 GAACTCTAAAGCATCGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTC 11709911 Query 9172 ACCTACAA 9179 ||||||| Sbjct 11709912 CCCTACAA 11709919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723699675095400