Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq87 159 3e-34 seq578 143 3e-29 seq1 102 8e-17 seq889 96.9 3e-15 seq89 87.8 2e-12 >seq87 Length=1495935 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| ||| Sbjct 1202716 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 1202775 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1202776 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1202835 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||||| |||||||| Sbjct 1202836 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 1202895 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||||||||| ||||||| || Sbjct 1202896 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1202943 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| ||| Sbjct 1202945 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 1203004 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1203005 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203064 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| || | |||||||||| |||||||||| Sbjct 1203065 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 1203124 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| |||| ||||| |||| || || Sbjct 1203125 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1203171 >seq578 Length=10717883 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| || || ||||| ||||||| | | || || ||| || Sbjct 1250304 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGGTGGAGCCC 1250363 Query 38301 ACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | || || | | || || || |||| || ||||| || ||||| | || Sbjct 1250364 AGCGACACCACTGAGAATG-TGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGA 1250422 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||| || ||||| Sbjct 1250423 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTA 1250482 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || || | || ||||| |||||||||| ||||||| || Sbjct 1250483 CAACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250533 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 1250535 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 1250594 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || ||||| || ||||| | ||||| Sbjct 1250595 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250654 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1250655 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1250714 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || ||||| |||||||||| ||||||| || Sbjct 1250715 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250761 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 1250763 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 1250822 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || ||||| || ||||| | ||||| Sbjct 1250823 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250882 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1250883 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1250942 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || ||||| |||| || ||| |||| || || Sbjct 1250943 ATCCAGAAAGAGTCTACTCTGCACCTGGTCCTCCGTCTGAGGGGTGG 1250989 >seq1 Length=88624873 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||||| ||||| |||||| ||| || | |||||||| |||||| | || | Sbjct 4804385 CCTCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCT 4804326 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || || || || || ||||| ||||| |||||||| ||||||||||| | Sbjct 4804325 TCAGCCAGAAGATAGCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGG 4804266 Query 133037 CCACCA 133042 |||||| Sbjct 4804265 CCACCA 4804260 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/116 (77%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAA 133225 |||||||||||||| || | ||||| || ||||| |||||||| ||| ||| || | Sbjct 4801567 TAGGTGTCGATGAGCAGGCTG--TACATCTCGGAGTGGACGTTCTCGATGAGGATCTGGA 4801510 Query 133226 AGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||||| ||||| || |||||| |||||||| || || ||| ||||| ||| Sbjct 4801509 AGCCGTAGAAGCAGCGGGCCTCGGGGACCTGCACCTCCTGGCTGAAGCGCTCCACC 4801454 >seq889 Length=60641186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || | |||||| ||||||||| | || || ||| ||| Sbjct 60498661 ATGCAGATATTCGTGAAGACCCTAATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 60498720 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| || | | |||| ||| ||| ||||| || || || || ||||||| Sbjct 60498721 GACACCAGTGAGAATG-TCAAAGCCAAA-TCCAAGACAAGGAAGGCATCCCACCCGACCA 60498778 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 | || || || | || ||||||||||||| |||| || || ||| |||||||| Sbjct 60498779 GCGGCTCCTGATATTTGCCAGCAAACAGCTGGAGGACGGTCGGACTCTCTCAGACTACAA 60498838 Query 38423 CATCCAAAAGGA 38434 ||| || || || Sbjct 60498839 CATTCAGAAAGA 60498850 >seq89 Length=40145203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || | || || | |||| |||||| ||| Sbjct 36668910 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGAACACCATCCTCGAGGTCGAGCCCAGT 36668851 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | ||| ||||||| ||||| ||| | || || | || || Sbjct 36668850 GACACCAAG-------TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAG 36668798 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | ||| ||||||||||||| || | | || ||| ||||||||| Sbjct 36668797 CAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAAC 36668738 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || | || || || |||| ||| | || |||| || Sbjct 36668737 ATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36668691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153224487040