Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq87 159 3e-34
seq578 143 3e-29
seq1 102 8e-17
seq889 96.9 3e-15
seq89 87.8 2e-12
>seq87
Length=1495935
Score = 159 bits (176), Expect = 3e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| |||
Sbjct 1202716 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 1202775
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 1202776 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1202835
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | ||| ||||| |||||||| || | |||||||||| ||||||||
Sbjct 1202836 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 1202895
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || ||||| |||||||||| ||||||| ||
Sbjct 1202896 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1202943
Score = 152 bits (168), Expect = 5e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| |||
Sbjct 1202945 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 1203004
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || ||| | |||||
Sbjct 1203005 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203064
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | ||| ||||| |||||||| || | |||||||||| ||||||||||
Sbjct 1203065 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 1203124
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || ||||| |||| ||||| |||| || ||
Sbjct 1203125 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1203171
>seq578
Length=10717883
Score = 143 bits (158), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| ||||| || || ||||| ||||||| | | || || ||| ||
Sbjct 1250304 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGGTGGAGCCC 1250363
Query 38301 ACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| ||||| | || || | | || || || |||| || ||||| || ||||| | ||
Sbjct 1250364 AGCGACACCACTGAGAATG-TGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGA 1250422
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| ||||||| | || ||||| |||||||| || | ||||| || |||||
Sbjct 1250423 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTA 1250482
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| || || | || ||||| |||||||||| ||||||| ||
Sbjct 1250483 CAACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250533
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 1250535 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 1250594
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| || ||||| || ||||| | |||||
Sbjct 1250595 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250654
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| ||||||| | || ||||| |||||||| || | ||||| || |||||||||
Sbjct 1250655 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1250714
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || || | || ||||| |||||||||| ||||||| ||
Sbjct 1250715 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250761
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| |
Sbjct 1250763 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 1250822
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| || ||||| || ||||| | |||||
Sbjct 1250823 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250882
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| ||||||| | || ||||| |||||||| || | ||||| || |||||||||
Sbjct 1250883 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1250942
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || || | || ||||| |||| || ||| |||| || ||
Sbjct 1250943 ATCCAGAAAGAGTCTACTCTGCACCTGGTCCTCCGTCTGAGGGGTGG 1250989
>seq1
Length=88624873
Score = 102 bits (112), Expect = 8e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
||||||||||| ||||| |||||| ||| || | |||||||| |||||| | || |
Sbjct 4804385 CCTCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCT 4804326
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| ||||| || || || || || ||||| ||||| |||||||| ||||||||||| |
Sbjct 4804325 TCAGCCAGAAGATAGCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGG 4804266
Query 133037 CCACCA 133042
||||||
Sbjct 4804265 CCACCA 4804260
Score = 82.4 bits (90), Expect = 8e-11
Identities = 89/116 (77%), Gaps = 4/116 (3%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAA 133225
|||||||||||||| || | ||||| || ||||| |||||||| ||| ||| || |
Sbjct 4801567 TAGGTGTCGATGAGCAGGCTG--TACATCTCGGAGTGGACGTTCTCGATGAGGATCTGGA 4801510
Query 133226 AGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281
||||||| ||||| || |||||| |||||||| || || ||| ||||| |||
Sbjct 4801509 AGCCGTAGAAGCAGCGGGCCTCGGGGACCTGCACCTCCTGGCTGAAGCGCTCCACC 4801454
>seq889
Length=60641186
Score = 96.9 bits (106), Expect = 3e-15
Identities = 139/192 (72%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| |||||||| || || || | |||||| ||||||||| | || || ||| |||
Sbjct 60498661 ATGCAGATATTCGTGAAGACCCTAATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 60498720
Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | ||| || | | |||| ||| ||| ||||| || || || || |||||||
Sbjct 60498721 GACACCAGTGAGAATG-TCAAAGCCAAA-TCCAAGACAAGGAAGGCATCCCACCCGACCA 60498778
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
| || || || | || ||||||||||||| |||| || || ||| ||||||||
Sbjct 60498779 GCGGCTCCTGATATTTGCCAGCAAACAGCTGGAGGACGGTCGGACTCTCTCAGACTACAA 60498838
Query 38423 CATCCAAAAGGA 38434
||| || || ||
Sbjct 60498839 CATTCAGAAAGA 60498850
>seq89
Length=40145203
Score = 87.8 bits (96), Expect = 2e-12
Identities = 155/227 (68%), Gaps = 7/227 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || ||||| || | || || | |||| |||||| |||
Sbjct 36668910 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGAACACCATCCTCGAGGTCGAGCCCAGT 36668851
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | ||| ||||||| ||||| ||| | || || | || ||
Sbjct 36668850 GACACCAAG-------TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAG 36668798
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| | || || | ||| ||||||||||||| || | | || ||| |||||||||
Sbjct 36668797 CAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAAC 36668738
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||| || | || || || |||| ||| | || |||| ||
Sbjct 36668737 ATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36668691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500153224487040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |