Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq12 111 6e-19 seq789 100 1e-15 seq222 98.7 4e-15 seq678 89.7 2e-12 seq322 89.7 2e-12 seq67 89.7 2e-12 >seq12 Length=50730043 Score = 111 bits (122), Expect = 6e-19 Identities = 264/395 (67%), Gaps = 22/395 (6%) Strand=Plus/Minus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 || || || |||||||| | | ||||| |||| || || |||||||| |||||| Sbjct 19038639 AAACCATACATTCAAGTTGACACTGGAGGTGGGCAAACCAAGACATTTGCTCCAGAAGAA 19038580 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 ||||| | |||||||| |||||||||||||||| | || ||| | || Sbjct 19038579 ATTTCTGCCATGGTTCTCACTAAAATGAAAGAAAGTGTGGAGGCGTATTTGGGAAAGAAG 19038520 Query 451313 GTTACTGATGCAGT-AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 |||||| ||||||| ||||||| || || || || |||||| ||||||||| Sbjct 19038519 GTTACTCATGCAGTCTTTTACTGTACCTGCCTACTTTAATGAT--------GCAAGCAAC 19038468 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| ||| | |||| || ||| | | || || ||||| || ||||| Sbjct 19038467 CAAAGATGCTGGAACAAGTGCTAAACGCAACGTTATGAGGATCATCAATGAGCCGACAGC 19038408 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 |||||| | || ||||| || | || | | | | | ||| || || || | || Sbjct 19038407 AGCTGCCATCGCTTATGGCCTGG----ATGAGAGGGA--GGGAGAGAAGAACATCCTGGT 19038354 Query 451492 ATTTGATTTTGGTGGAGGAAC--TCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 |||||| | |||| ||||| ||| ||| || | || | || || |||| || Sbjct 19038353 ATTTGACCTATGTGGTGGAACCTTCA--ATATAGCTCTTCTCACCATCGACAATGGTGTC 19038296 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCT 451584 || |||| ||| || ||||| |||||||| || Sbjct 19038295 TTCAAAGTCGTGGCCACTAATGGAGATACTCACCT 19038261 >seq789 Length=7921018 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || || || | || || || || | ||||| | || Sbjct 5846964 ATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTCC 5847023 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || ||||||||||||||||||||||||||||| Sbjct 5847024 GACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAG 5847083 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || || || ||||| ||||||||| | |||||| | ||||| || Sbjct 5847084 CAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGACGCACTTTGTCTGATTACAAC 5847143 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | | ||| | || || || | || || ||||| Sbjct 5847144 ATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACT 5847181 >seq222 Length=26775304 Score = 98.7 bits (108), Expect = 4e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 |||||| || | |||||||| | || |||||||||||||||| |||||||| || ||| Sbjct 7922891 GGAAAAGAATTGAGTAAGAGCATCAACCCTGATGAAGCTGTTGTTTATGGTGCAGCTGTT 7922832 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAAT-TAGGAGATATTCTGTTAGTAGA 452085 || || || |||||| | || | | | |||||| | |||| | ||| | |||| Sbjct 7922831 CAGGCTGCCATTCTATCTGG-AGACAAGTCTAAAAATGTCCAAGATTTGCTGCTTTTAGA 7922773 Query 452086 TGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC 452133 ||| | |||| |||||||| ||||||| ||||||||| | | ||| Sbjct 7922772 TGTCTCTTCTCTTTCTCTTGGTATTGAAACGGCTGGTGGAGTCAAGAC 7922725 >seq678 Length=9220056 Score = 89.7 bits (98), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||| ||| || || || ||||| ||| || | || | || | Sbjct 661764 TGCAATCTCTGGCACTAAGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 661821 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 661822 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 661881 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 661882 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 661941 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 661942 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 662001 Query 96287 TAGGG 96291 || || Sbjct 662002 TATGG 662006 >seq322 Length=21489822 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || || |||||||||||||||||||||||||| ||| | | || || | | || Sbjct 7411997 AAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTTGCTGCTAAG 7411938 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| ||||||||| |||||| | ||||| || ||| | ||||| | || ||||| Sbjct 7411937 CAACTGGAAGATGGACATACTTTGTCTGATTACAACATTAAAAAGGAGTCCACTCTTCAT 7411878 Query 391254 TTAGTATTAAGACT 391267 | || || ||||| Sbjct 7411877 CTTGTGTTGAGACT 7411864 >seq67 Length=41736765 Score = 89.7 bits (98), Expect = 2e-12 Identities = 340/529 (64%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 |||||||| || || | || ||||||| |||||||| || || | ||| | || || Sbjct 41130480 GCAATTGGCATCGACTTGGGCACCACCTACTCATGTGTGGGGGTGTTCCAGCACGGCAAA 41130539 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 || || || || || || ||||| || || || || || || | || || || Sbjct 41130540 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCC--CA--GCTACGTGGCGTT 41130595 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 ||| || | || | || | ||| | || || || | | | ||| ||| || Sbjct 41130596 TACTGACACCGAGCGGCTGATCGGGGATGCGGCCAAGAACCA-GGTGGCCATGAATCCCC 41130654 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| |||||| | || ||||| | || | ||| | ||| | Sbjct 41130655 AGAACACCGTCTTTGATGCCAAACGTCTGATCGGCCGGAAGTTCAACGATCCTGTTGTGC 41130714 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 | ||| | || | | ||| | | || | ||| || ||| |||||| | | Sbjct 41130715 AGTCAGATATGAAGCTTTGGCCTTTTCAAGTGATCAATGAAGGAGGCAAGCCCAAGGTGG 41130774 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 || || ||||| || | |||| |||| || || || || ||||| ||||| | Sbjct 41130775 TGGTGTCCTACAAAGGGGAGAATAAAGCTTTCTACCCCGAGGAGATCTCATCAATGGTGC 41130834 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | || || ||||| || || ||||| | | | || || | || |||| || | Sbjct 41130835 TGACAAAGATGAAGGAGACTGCAGAGGCCTTTTTGGGCCACCCTATCACCAATGCCGTGA 41130894 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || || ||||||||||| | || || ||||| || || |||||||| | Sbjct 41130895 TCACTGTGCCAGCCTATTTCAATGACTCTCAGCGCCAAGCCACCAAGGATGCAGGTGTGA 41130954 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 | || || | ||||| || |||| || || || || ||||| ||||| Sbjct 41130955 TCGCAGGACTCAATGTGCTCAGAATCATCAACGAGCCCACAGCTGCTGC 41131003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975639142204148