Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq111 147 2e-29 seq222 105 5e-17 seq34 86.0 5e-11 >seq111 Length=37056987 Score = 147 bits (162), Expect = 2e-29 Identities = 368/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| || ||||| || | | | | ||| | || ||| |||||||| Sbjct 25387432 GCACCATAAGCAACAGCCTCGTCAGGGTTGATACTCTTATTCAATTCTTTTCCATTGAAG 25387373 Query 517670 AAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| | ||||||| ||| | ||| |||||||||| || || || || || ||||| Sbjct 25387372 AAATCTTGTAGAAGTT-TCTGGATCTTGGGAATACGAGTAGAACCACCCACCAAGACAAT 25387314 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | |||||| || || || || | ||| | | | || || || || || || Sbjct 25387313 GTCATGGATCTGTGACTTGTCAAGCTTAGCATCTCGCAGAGCCTTCTCCACAGGGTCTAG 25387254 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | | ||||| ||| | | || ||||| ||| ||| | ||||| | | || Sbjct 25387253 AGTGCCACGAAACAGGTCAGCATTCAGCTCTTCAAATCGAGCACGAGTAATGGAGGTATA 25387194 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || || ||||| | | ||||||| ||||| | | ||| || ||||| || Sbjct 25387193 GAAGTCGATCCCTTCATAGAGGGAATCAATCTCAATACTGGCTTGGGTGCTGGAAGAGAG 25387134 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 517964 | | ||||| ||||||||||| || | || | || | || ||| | || | | Sbjct 25387133 GGTTCTCTTAGCTCGTTCACATGCAGTGCGAAGACGGCGGACAGCTCTCTTGTTCTCACT 25387074 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022 ||| || | |||| || | |||||| || ||| | | ||| | || | || Sbjct 25387073 GAT----GTCCTTCTTATGCTTGCGCTTGAACTCAGCAATAAA--ATGGTTGACCATCCG 25387020 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||||||||| || || || | || | ||| | |||| | |||||| |||| Sbjct 25387019 GTTGTCAAAATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTTACTTCAAAAAT 25386960 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||||||||| || | | | |||||| || ||||| || | ||||||||| || Sbjct 25386959 TCCATCTTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCTAAATCAAAAATCAG 25386900 Query 518143 TACATTCATTTC 518154 || || |||| Sbjct 25386899 CACGTTTCTTTC 25386888 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 tttttATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||| ||||| ||||| |||||||| | ||| Sbjct 25386795 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCTGTTGGCTCATTGATAATTCTAAGTACA 25386736 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 |||||||||||||| | || |||||||| || || || | || || || |||||||| Sbjct 25386735 TTAAGACCAGCAATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTAAAATAA 25386676 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||||| || |||| Sbjct 25386675 GCTGGCACAGTAACCACAGCAT 25386654 >seq222 Length=26775304 Score = 105 bits (116), Expect = 5e-17 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 517505 CCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 517564 ||||| || ||||| | |||||||||||||| || |||||| | || | | || ||| Sbjct 7922734 CCACCAGCCGTTTCAATACCAAGAGAAAGAGAAGAGACATCTAAAAGCAGCAAATCTTGG 7922793 Query 517565 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 | |||| | | | ||| ||||| || || |||| ||| |||||||| ||||| Sbjct 7922794 ACATTTTTAGACTTGTCTCCAGATAGAATGGCAGCCTGAACAGCTGCACCATAAACAACA 7922853 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684 ||||||||||| || | | | | | | || ||| |||||||| || | | |||||| Sbjct 7922854 GCTTCATCAGGGTTGATGCTCTTACTCAATTCTTTTCCATTGAAGAAGTCTTGTAGAAGT 7922913 Query 517685 TGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 517743 | ||| | ||| |||||| ||| || | || || | ||||| ||||| | |||||| Sbjct 7922914 T-TCTGGATCTTGGGAATATGAGTAGAACTACCCACCAGGACAATGTCATGGATCTGTGA 7922972 Score = 91.5 bits (100), Expect = 1e-12 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 518165 tttttATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | | ||| |||| ||||||||| ||||||| ||| |||||||| | ||| Sbjct 7923345 TTTTTGTCTAAGCAATAGGCAATAGCAGCAGCTGTTGGTT-ATTGATAATTCTAAGTACA 7923403 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 |||||||||||||| |||| |||||| | || || || || ||||| ||||| || Sbjct 7923404 TTAAGACCAGCAATAGTTCCAGCATCTGTGGTTGCCTGATGCTGAGAATCATTAAAGTAA 7923463 Query 518285 GCAGG 518289 || || Sbjct 7923464 GCTGG 7923468 >seq34 Length=50712660 Score = 86.0 bits (94), Expect = 5e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 366995 TAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTC 367054 || |||| || ||||| ||||| ||||| |||||||||||||| || | |||||| Sbjct 36572171 TAATAGCTACTATAGCTTTTGGAATGGGCATTAATAAACCGGACATTCGCAAAATTATTC 36572230 Query 367055 ATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTG 367114 ||||||| || || || | || ||| || || || ||| |||||||||| || || | Sbjct 36572231 ATTATGGCGCACCTAAAGAAATGGAATCCTACTACCAGGAAGTTGGTAGAGCTGGCCGAG 36572290 Query 367115 ATGGA 367119 ||||| Sbjct 36572291 ATGGA 36572295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780667029466486