Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 5e-14 seq29 82.4 9e-11 >seq5 Length=4632403 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 3954346 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3954287 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || ||||||||||| || |||||||| | |||| | ||| || Sbjct 3954286 TCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3954227 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 3954226 TTTCTTACACCATA 3954213 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/216 (68%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||||| |||| ||||| || | ||| |||| ||| ||||| | || || || || Sbjct 3949221 TCCTTTGCTTACTGGAGAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATC 3949162 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 ||| || ||||||| || | |||||| || || ||||| |||| | ||||| | Sbjct 3949161 ACAGCTGGCTTCCAGGGCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTG 3949102 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 ||||||| ||||||||||| || | |||||||| ||||| || Sbjct 3949101 GGCTTCTGGACTCTCAAAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTAC 3949042 Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755 |||||| ||||| || | |||| |||||| || || Sbjct 3949041 ACCAATTCCAATGGGGCGATGACGTTTATTTGATAA 3949006 >seq29 Length=3441549 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | ||| | ||| || | | |||||||||||| |||||||| ||||| || || Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || ||||| ||||| | || ||||| || || ||||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3376474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086800466840