Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq111 125 6e-23 seq789 109 4e-18 seq578 98.7 8e-15 seq1000 95.1 1e-13 seq322 95.1 1e-13 seq222 95.1 1e-13 seq52 93.3 3e-13 seq200 91.5 1e-12 seq289 86.0 5e-11 >seq111 Length=37056987 Score = 125 bits (138), Expect = 6e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||| ||||| |||||||||||||| || || || ||||| Sbjct 25386647 GTTACCAATGCTGTGGTTACTGTGCCAGCTTATTTTAATGACTCTCAGCGCCAGGCTACC 25386706 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| |||||||| |||||||| ||| | ||||||||||| || || ||| Sbjct 25386707 AAAGATGCTGGGACCATTGCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGCT 25386766 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 25386767 GCTGCTATTGCCTATGG 25386783 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || || ||| | || ||||| || ||||| ||||| | || |||| || Sbjct 25385908 GCTGTTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAG 25385967 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||||||||| || || |||| |||||| |||||| ||||||| Sbjct 25385968 GTGGAGATCATTGCCAATGATCAGGGAAATCGAACCACTCCAAGTTATGTCGCTTTCACT 25386027 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || || |||| | |||| ||||| |||||| | |||| Sbjct 25386028 GACACCGAACGACTGATTGGGGATGCTGCAAAAAACCAAG 25386067 Score = 91.5 bits (100), Expect = 1e-12 Identities = 227/345 (66%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953 |||| | || ||||| | ||||| || ||| |||| || || | || || || | || Sbjct 25387088 AGCTGTCCGCCGTCTTCGCACTGCATGTGAACGAGCTAAGAGAACCCTCTCTTCCAGCAC 25387147 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013 ||| ||| |||||| | ||||| | | ||| || || || | |||| | ||| | Sbjct 25387148 CCAAGCCAGTATTGAGATTGATTCCCTCTATGAAGGGATCGACTTCTATACCTCCATTAC 25387207 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 | || ||||||||| | | |||| || ||| | || | || || || || Sbjct 25387208 TCGTGCTCGATTTGAAGAGCTGAATGCTGACCTGTTTCGTGGCACTCTAGACCCTGTGGA 25387267 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 | | | | ||||| | ||| |||| || || | | ||||| ||||| | || || Sbjct 25387268 GAAGGCTCTGCGAGATGCTAAGCTTGACAAGTCACAGATCCATGACATTGTCTTGGTGGG 25387327 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||| ||||| | ||||| || || | || | || || |||||||| ||| | Sbjct 25387328 TGGTTCTACTCGTATTCCCAAGATCCAGAAACTTCTACAAGATTTCTTCAATGGAAAAGA 25387387 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 ||| ||| | ||| | || || || ||||||||||| |||||||| Sbjct 25387388 ATTGAATAAGAGTATCAACCCTGACGAGGCTGTTGCTTATGGTGC 25387432 >seq789 Length=7921018 Score = 109 bits (120), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 |||||||| || || ||| ||||| ||| |||||||||| | ||| | | ||||| Sbjct 5847172 ACAAGATGGAGAGTGGACTCCCTTTG--AATGTTGTAATCAGACAAAGTGCGTCCATCTT 5847115 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || || |||||||||||||||||||||||||| ||||||| Sbjct 5847114 CCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTT 5847055 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || || || || | | | | | ||| || | || Sbjct 5847054 GGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGGTCC 5846995 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| ||||| |||||||| ||||| Sbjct 5846994 TCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5846964 >seq578 Length=10717883 Score = 98.7 bits (108), Expect = 8e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| |||||||| || || || || ||| ||||| || ||||| |||| ||||| Sbjct 1250984 CCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 1250925 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || || || ||||| || || || ||||| ||||||||||| || Sbjct 1250924 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCC 1250865 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 ||||||||| || || || || || |||||| || || || | | || ||| | Sbjct 1250864 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTG-GGCTCCACTTCCA 1250806 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || ||||| || || || ||||| || ||||| Sbjct 1250805 GGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 Score = 86.0 bits (94), Expect = 5e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || || || || || || || || || ||| | | ||| || ||||| |||| |||| Sbjct 1250755 CTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGAG 1250698 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || || || || ||||| || || || ||||| ||||||||||| | Sbjct 1250697 TGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGC 1250638 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 |||||||||| || || || || || |||||| || || || | | || || Sbjct 1250637 CTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTG-GGCTCCACCTCC 1250579 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| ||||| || ||||| || ||||| Sbjct 1250578 AGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 >seq1000 Length=59189873 Score = 95.1 bits (104), Expect = 1e-13 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 550083 GAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 |||||| |||| |||| | ||||| | | ||| |||| | |||| ||||| |||| Sbjct 50848443 GAACTATTCCAAGTTATACTGCTTTCGCCAACACTAAACAACTGATTGGAGATGCTGCAA 50848502 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || |||||| || || || ||||| || |||| |||| || | | | |||||| Sbjct 50848503 AAAATCAAGTGACAACGAACCCAACCAACACAGTTTTCAATGCCAAGCATCTTATTGGAT 50848562 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 | || ||| ||||| | ||||||| | ||||||||||||||||| ||| Sbjct 50848563 GTAGCTTTTATGATGCTGTTGTTCAGTCTGATATGAAGCATTGGCCCTTC 50848612 >seq322 Length=21489822 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||| || || || |||| |||||||||| | ||| | |||||| Sbjct 7411873 ACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGTATGTCCATCTTCC 7411932 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 ||||| || | ||||| || || |||||||||||||||||||||||||| ||||| || Sbjct 7411933 AGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 7411992 Query 563386 ATTTT 563390 || || Sbjct 7411993 ATCTT 7411997 >seq222 Length=26775304 Score = 95.1 bits (104), Expect = 1e-13 Identities = 173/251 (69%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | || ||||| || ||||| ||||| | || |||| ||||| || || ||| Sbjct 7923873 GATCTTGGTACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAAGTGGAGATCATT 7923814 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 ||||||||||| | || ||| || ||| |||||| |||||| || || || Sbjct 7923813 GCCAATGATCATAGAAATTGAATCACCCCAAGTTATGTCGTTTTCACTGACAC----CAA 7923758 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAA--GCCACTGGTAATCCTACCAATACTATTTTTG 550181 | ||| || || |||||| ||||| || || || || | |||||| |||||| Sbjct 7923757 ATGACTGGAGACGCTGCAAAAAATCAAATAGCAATG--AACCCCATCAATACAGTTTTTG 7923700 Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241 |||| || | | |||||| | || ||| ||||| | ||| ||| | |||||||||| Sbjct 7923699 ATGCCAAGTATCTGATTGGATGTAGATTTGATGATGCTGTTGTCCAGTCTGATATGAAGC 7923640 Query 550242 ATTGGCCTTTC 550252 | |||| ||| Sbjct 7923639 GTCGGCCCTTC 7923629 >seq52 Length=2480672 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/127 (78%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT-ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG-AATCTT 563323 ||||||||||| || | | |||| | ||| |||||| ||| | ||| | | |||||| Sbjct 411645 ACAAGATGAAGAGTGAACTCCTTTTG-AATGTTGTAACCAGACAAAGTACATCCAATCTT 411587 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || || | |||||||||||||||||||||||| ||||| | Sbjct 411586 CCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 411527 Query 563384 GAATTTT 563390 | || || Sbjct 411526 GGATCTT 411520 >seq200 Length=27928671 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | |||||||| || || |||||||| | ||| | ||||| || Sbjct 8938793 GTTACTCATGCAGTCGTTACTGTACCTGCCTACTTTAATGATGCTCAAAGGCAAGCAACC 8938852 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| ||||||||||| |||||| | | || |||||||| || Sbjct 8938853 AAAGATGCTGGAACAATTGCTGGACTGAATGTTATGAGAATCATCAATGAGCC 8938905 >seq289 Length=23972852 Score = 86.0 bits (94), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| ||||| || || ||||| |||||||| || || || |||||| ||| || | Sbjct 13296285 ATGGAAAAGTGGAGATCATTGC-AATGATCAGGGAAATCAAATCACTCCAAGTTACGTCT 13296227 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT- 550162 || ||| | || |||| | || | ||||| ||||| |||||| ||| ||| Sbjct 13296226 CTGTCATTAACACCGAACGACTGATTCGAGATGCTGCAAATAATCAAG----TGGCAATA 13296171 Query 550163 ---CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG 550219 || |||| || |||| |||| || | | | | |||| | || ||| ||||| | Sbjct 13296170 AAACCAGCCAACACAGTTTTCAATGCCAAGCATCTGACTGGATGTAGATTTCATGATGCT 13296111 Query 550220 ACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 | ||| ||| | ||||||||||||||||| ||| Sbjct 13296110 ATTGTCCAGTCTGATATGAAGCATTGGCCCTTC 13296078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029130418599190